enterobase / enterobase-web

Filename
API Reference
About EnteroBase Schemes
About the API
Accessory Genome
Add_upload_reads
Basic usage of Grapetree tutorial
Canonical top level links
Clostridioides Statistics
Downloading cgMLST-rMLST profiles from the website
EditMetadata tut 1
Editing strain metadata
EnteroBase Backend Pipeline Optional Genera Assembly Criteria
EnteroBase Backend Pipeline
EnteroBase Backend Pipeline: CRISPer
EnteroBase Backend Pipeline: MetaParser
EnteroBase Backend Pipeline: NServ
EnteroBase Backend Pipeline: QA evaluation
EnteroBase Backend Pipeline: QAssembly
EnteroBase Backend Pipeline: QAtoFasta
EnteroBase Backend Pipeline: RCatch
EnteroBase Backend Pipeline: SeroPred
EnteroBase Backend Pipeline: The Calculation Engine
EnteroBase Backend Pipeline: matrix_phylogeny
EnteroBase Backend Pipeline: nomenclature
EnteroBase Backend Pipeline: prokka_annotation
EnteroBase Backend Pipeline: refMapper
EnteroBase Backend Pipeline: refMapper_matrix
EnteroBase Backend Pipeline: refMasker
EnteroBase Features
EnteroBase SNPs JBrowse
EnteroBase TCs
EnteroTools Old
EnteroTools: nomenclature old
Enterobase & Bionumerics
Enterobase Training 2
Enterobase training
Enterobase website
Enterotools nomenclature - old diagram
Escherichia MLST Legacy Info
Escherichia Statistics
Experiment_Fields
FAQ
Getting started with Enterobase API
GrapeTree-api
GrapeTree
Home
Installing GrapeTree stand-alone version
Jobs
Locus Search
MS Trees
MSTree tut 1
Main_Search_Page
Metadata Fields
Moraxella MLST Legacy Info
Moraxella Statistics
Reference manual of GrapeTree features
SNP Projects
SNP Tree Tutorial 1
Salmonella MLST Legacy Info
Salmonella Statistics
Searching Strains by ST or Allele
Searching similar strains-near neighbours
Tutorials
User-Defined Content
Using the Browser
Yersinia MLST Legacy Info
Yersinia Statistics
api_alleles
api_assemblies
api_barcode_parameter
api_download_assemblies
api_download_schemes
api_info
api_limit_parameter
api_loci
api_login
api_lookup
api_offset_parameter
api_only_fields_parameter
api_orderby_parameter
api_reldate_parameter
api_renew_login
api_schemes
api_sortorder_parameter
api_straindata
api_strains
api_strainsversion
api_structure
api_sts
api_traces
buddies
deeperlineages
ecoli MLST Legacy Info RST
login
mcatarrhalis MLST Legacy Info RST
outbreakexample
search ST types from alleles
senterica MLST Legacy Info RST
species-index
st_allele_search
talks
user_download_annotations
user_download_assemblies
user_download_schemes
workspaces
yersinia MLST Legacy Info RST

API Reference

About EnteroBase Schemes

About the API

Accessory Genome

Add_upload_reads

Basic usage of Grapetree tutorial

Canonical top level links

Clostridioides Statistics

Downloading cgMLST-rMLST profiles from the website

EditMetadata tut 1

Editing strain metadata

EnteroBase Backend Pipeline Optional Genera Assembly Criteria