galaxy / galaxy-central

Main development repository for Galaxy. Active development happens here, and this repository is thus intended for those working on Galaxy development. See http://bitbucket.org/galaxy/galaxy-dist/ for a more stable repository intended for end-users.

Clone this repository (size: 102.9 MB): HTTPS / SSH
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commit 3362: 445986a09dbb
parent 3361: 606686b073f3
child 3363: 1fc06b260097
Removed NumberField from form_builder default
Ramkrishna Chakrabarty / rc
5 weeks ago

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galaxy-central /
filename size last modified message
contrib  
cron  
database  
lib  
locale  
scripts  
static  
templates  
test  
test-data  
tool-data  
tools  
.hgignore 443 B 6 months ago prepare for new trackster
LICENSE.txt 1.2 KB 18 months ago Spiffy new library browser interface. Also, dim datasets…
MANIFEST.in 507 B 3 years ago Moving james-wsgi branch to new trunk.
Makefile 329 B 3 years ago Moving james-wsgi branch to new trunk.
README.txt 951 B 23 months ago Remove setup.py, update README.txt
Revision 379 B 3 years ago Revision info
buildbot_setup.sh 2.1 KB 6 weeks ago Add path to OS X HYPHY for buildbot
datatypes_conf.xml.sample 16.5 KB 2 months ago trackster: support BAM visualization with samtools,…
dist-eggs.ini 4.5 KB 7 weeks ago Patch from Assaf Gordon to support Apache's mod_xsendfile fo…
eggs.ini 4.5 KB 6 weeks ago upgrading pexpect to v2.4
manage_db.sh 209 B 2 months ago python run from virtualenv sets up site.py to pull things…
reports_wsgi.ini.sample 2.2 KB 15 months ago merging from central
run.sh 651 B 2 months ago python run from virtualenv sets up site.py to pull things…
run_functional_tests.sh 1.9 KB 2 months ago python run from virtualenv sets up site.py to pull things…
run_galaxy_listener.sh 128 B 3 months ago AMQP listener config file bug fix
run_reports.sh 169 B 2 months ago python run from virtualenv sets up site.py to pull things…
run_unit_tests.sh 291 B 2 months ago python run from virtualenv sets up site.py to pull things…
set_metadata.sh 91 B 2 months ago python run from virtualenv sets up site.py to pull things…
setup.sh 1.3 KB 2 months ago python run from virtualenv sets up site.py to pull things…
setup_paths.sh 1.3 KB 2 years ago Skip check_eggs.py for buildbot. If fetch_eggs.py succeeded…
tool_conf.xml.main 13.8 KB 6 weeks ago Create NGS peak calling section. Add MACS peak caller. Move…
tool_conf.xml.sample 15.4 KB 5 weeks ago Initial version of DNA code filter tool
tool_list.py 2.5 KB 2 years ago add test section option
transfer_datasets.ini.sample 123 B 6 weeks ago sample config file for specifying the user
universe_wsgi.ini.sample 10.2 KB 4 months ago Framework for recording user actions for reports; framework…

README

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GALAXY
======
http://g2.bx.psu.edu/

The latest information about Galaxy is always available via the Galaxy
website above.

HOW TO START
============
Galaxy requires Python 2.4 or 2.5. To check your python version, run:

% python -V
Python 2.4.4

Before starting Galaxy for the first time, please run the setup script:

% sh setup.sh

If setup.sh finishes successfully, you can then proceed to starting Galaxy:

% sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:

http://localhost:8080

You may wish to make changes from the default configuration.  This can be done
in the universe_wsgi.ini file.  Tools are configured in tool_conf.xml.  Details
on adding tools can be found on the Galaxy website (linked above).

Not all dependencies are included for the tools provided in the sample
tool_conf.xml.  A full list of external dependencies is available at:

http://g2.trac.bx.psu.edu/wiki/ToolDependencies