galaxy / galaxy-central
Main development repository for Galaxy. Active development happens here, and this repository is thus intended for those working on Galaxy development. See http://bitbucket.org/galaxy/galaxy-dist/ for a more stable repository intended for end-users.
Clone this repository (size: 44.8 MB): HTTPS / SSH
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Galaxy provides tools for extracting subsets of genomic sequences and alignments. Currently the public instance of Galaxy supports the following sequences and alignments
28 sequences are available in Galaxy (not including Microbes):
| Build | Species | Clade | ||||
| anoGam1 | A. gambiae | Insect | ||||
| bosTau2 | Cow | Vertebrate | ||||
| canFam1 | Dog | Vertebrate | ||||
| canFam2 | Dog | Vertebrate | ||||
| ce2 | C. elegans | Nematode | ||||
| danRer2 | Zebrafish | Vertebrate | ||||
| danRer3 | Zebrafish | Vertebrate | ||||
| danRer4 | Zebrafish | Vertebrate | ||||
| dm2 | D. melanogaster | Insect | ||||
| dp3 | D. pseudoobscura | Insect | ||||
| droSim1 | D. simulans | Insect | ||||
| droYak2 | D. yakuba | Insect | ||||
| fr1 | Fugu | Vertebrate | ||||
| galGal2 | Chicken | Vertebrate | ||||
| hg16 | Human | Vertebrate | ||||
| hg17 | Human | Vertebrate | ||||
| hg18 | Human | Vertebrate | ||||
| musMus6 | Mouse | Vertebrate | ||||
| musMus7 | Mouse | Vertebrate | ||||
| musMus8 | Mouse | Vertebrate | ||||
| monDom4 | Opossum | Vertebrate | ||||
| panTro1 | Chimpanzee | Vertebrate | ||||
| panTro2 | Chimpanzee | Vertebrate | ||||
| rheMac2 | Rhesus | Vertebrate | ||||
| ratNor3 | Rat | Vertebrate | ||||
| ratNor4 | Rat | Vertebrate | ||||
| sacCer1 | Yeast (S. cerevisiae) | Other | ||||
| tetNig1 | Tetraodon | Vertebrate |
156 pairwise alignments are available in Galaxy:
| Build | Aligned with | |||
| anoGam1 | dm1 | |||
| dm2 | ||||
| canFam1 | hg17 | |||
| musMus6 | ||||
| canFam2 | canFam2 | |||
| hg17 | ||||
| hg18 | ||||
| musMus6 | ||||
| musMus7 | ||||
| musMus8 | ||||
| ratNor3 | ||||
| ratNor4 | ||||
| danRer2 | fr1 | |||
| hg17 | ||||
| musMus6 | ||||
| tetNig1 | ||||
| danRer3 | fr1 | |||
| hg18 | ||||
| musMus7 | ||||
| musMus8 | ||||
| tetNig1 | ||||
| danRer4 | fr1 | |||
| hg18 | ||||
| musMus8 | ||||
| ratNor4 | ||||
| tetNig1 | ||||
| dm2 | anoGam1 | |||
| apiMel1 | ||||
| apiMel2 | ||||
| dp2 | ||||
| dp3 | ||||
| droAna1 | ||||
| droMoj1 | ||||
| droPer1 | ||||
| droSec1 | ||||
| droSim1 | ||||
| droVir1 | ||||
| droYak1 | ||||
| dp3 | dm2 | |||
| droSim1 | dm2 | |||
| droYak2 | dm2 | |||
| fr1 | danRer2 | |||
| danRer3 | ||||
| danRer4 | ||||
| hg18 | ||||
| musMus6 | ||||
| musMus7 | ||||
| musMus8 | ||||
| galGal2 | danRer2 | |||
| hg16 | ||||
| hg17 | ||||
| hg18 | ||||
| musMus6 | ||||
| musMus7 | ||||
| musMus8 | ||||
| monDom1 | ||||
| ratNor4 | ||||
| tetNig1 | ||||
| xenTro1 | ||||
| hg16 | musMus3 | |||
| mm4 | ||||
| musMus6 | ||||
| panTro1 | ||||
| ratNor3 | ||||
| hg17 | bosTau1 | |||
| bosTau2 | ||||
| canFam1 | ||||
| canFam2 | ||||
| danRer1 | ||||
| danRer2 | ||||
| danRer3 | ||||
| fr1 | ||||
| galGal2 | ||||
| musMus5 | ||||
| musMus6 | ||||
| musMus7 | ||||
| monDom1 | ||||
| panTro1 | ||||
| rheMac1 | ||||
| rheMac2 | ||||
| ratNor3 | ||||
| tetNig1 | ||||
| hg18 | bosTau2 | |||
| canFam2 | ||||
| danRer3 | ||||
| danRer4 | ||||
| fr1 | ||||
| galGal2 | ||||
| musMus7 | ||||
| musMus8 | ||||
| panTro1 | ||||
| rheMac2 | ||||
| ratNor4 | ||||
| tetNig1 | ||||
| xenTro1 | ||||
| musMus6 | bosTau1 | |||
| canFam1 | ||||
| danRer2 | ||||
| fr1 | ||||
| galGal2 | ||||
| hg16 | ||||
| hg17 | ||||
| monDom1 | ||||
| panTro1 | ||||
| ratNor3 | ||||
| tetNig1 | ||||
| xenTro1 | ||||
| musMus7 | bosTau2 | |||
| canFam2 | ||||
| danRer3 | ||||
| fr1 | ||||
| galGal2 | ||||
| hg17 | ||||
| hg18 | ||||
| panTro1 | ||||
| rheMac1 | ||||
| ratNor3 | ||||
| tetNig1 | ||||
| xenTro1 | ||||
| musMus8 | bosTau2 | |||
| canFam2 | ||||
| danRer3 | ||||
| danRer4 | ||||
| fr1 | ||||
| galGal2 | ||||
| hg17 | ||||
| hg18 | ||||
| monDom4 | ||||
| panTro1 | ||||
| rheMac2 | ||||
| ratNor4 | ||||
| tetNig1 | ||||
| xenTro1 | ||||
| xenTro2 | ||||
| panTro1 | hg16 | |||
| hg18 | ||||
| musMus6 | ||||
| musMus7 | ||||
| musMus8 | ||||
| rheMac2 | hg18 | |||
| musMus8 | ||||
| ratNor4 | ||||
| ratNor3 | hg18 | |||
| musMus8 | ||||
| ratNor4 | ||||
| ratNor4 | hg18 | |||
| musMus8 | ||||
| ratNor4 | ||||
| tetNig1 | danRer3 | |||
| danRer4 | ||||
| fr1 | ||||
| hg17 | ||||
| hg18 | ||||
| musMus6 | ||||
| musMus7 | ||||
| musMus8 |
4 multiZ alignments are available in Galaxy:
- hg17-panTro1-musMus5-ratNor3-canFam1-galGal2-fugRub1-danRer1
- hg18-panTro1-bosTau2-rheMac2-musMus8-ratNor4-canFam2-echTel1-loxAfr1-oryCun1-danRer3-monDom4-dasNov1-galGal2-fr1-tetNig1-xenTro1
- hg18-panTro2-rheMac2-musMus8-canFam2
- hg18-panTro2-rheMac2
This revision is from 2009-11-18 18:15