CDS missing from ConvertDb-genbank output

[Jason Vander Heiden]

Junction CDS seems is missing from the ConvertDb-genbank output in v0.4.6 and current tip. It is not missing in v0.4.5. Tested with example S43 data.

[Jason Vander Heiden]

@Julian Zhou , I think this is fixed in 618970c. Could you test, please?

My test command was:

ConvertDb.py genbank -d S43_update.tab
--product "immunoglobulin heavy chain"
--db "IMGT/GENE-DB"
--inf "IgBLAST:1.7.0"
--organism "Homo sapiens"
--sex Male
--tissue "Peripheral blood"
--cell-type "B cell"
--outdir output_asn
--isolate S43
--cf CPRIMER
--nf DUPCOUNT
--asis-id
--allow-stop
--format changeo
--asn
--sbt S43_template.sbt

‌

[Julian Zhou]

Yes, I tested on my data and the CDS/junction feature is back. Thumbs up!

[Jason Vander Heiden]

Fixed in 618970c.