Verify all docs now use AIRR example files

[Jason Vander Heiden]

Need to update the docs to use AIRR example files, if they don’t already.

[Jason Vander Heiden]

I took care of most of them. @Kenneth Hoehn , can you swap over the igphyml example docs?

[Kenneth Hoehn]

Done: https://bitbucket.org/kleinstein/igphyml/commits/c9e4c258db6841007caed27e81f81b444ee67ed8

[Kenneth Hoehn]

Oops forgot the igphyml example in changeo. Fixed now though: 7d5bb59

[Jason Vander Heiden]

Thanks!