kleinstein / changeo / issues / #36 - Extension of distance matrix doesn't properly account for ambiguous characters — Bitbucket

Issue #36 resolved

Jason Vander Heiden created an issue 2015-06-10

Character matches that are in the ACGTN-. character set are currently being defined as Infinite distance when extending an existing matrix in getDNADistMatrix() and getAADistMatrix(). Should be better, probably by averaging the input distances over the ambiguous set.

Comments (7)

Jason Vander Heiden reporter
Ambiguous character support also seems to be missing from hs1f and m1n models.
- 2015-10-09T22:53:56+00:00
Namita Gupta
I don't know who is best for working on this, but it is no longer me :) Please reassign!
- 2017-04-10T19:01:01+00:00
Jason Vander Heiden reporter
- assigned issue to
  
  Jason Vander Heiden
- 2017-04-10T19:41:46+00:00
ssnn
- assigned issue to
  
  Roy Jiang
- 2020-03-06T16:39:12+00:00
Roy Jiang
This looks resolved. Please confirm.

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@Jason Vander Heiden
- 2020-03-06T16:43:31+00:00
Roy Jiang
- marked as enhancement
- 2020-03-06T16:47:35+00:00
Jason Vander Heiden reporter
- changed status to resolved
Looks good to me.
- 2020-03-06T17:17:29+00:00
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Assignee: Roy Jiang

Type: enhancement

Priority: minor

Status: resolved

Milestone: –

Votes: 0

Watchers: 4

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