How should X be scored in DefineClones?

Issue #38 resolved
Jason Vander Heiden created an issue

Currently, X is a mismatch in the 'aa' model of DefineClones... Correct?

Comments (2)

  1. Jason Vander Heiden reporter

    I changed the default so that X and gap characters always count as a match in a3ac399... Pending some info as to why this is the way it is.

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