ERROR: File TR.J.human.F+ORF+infrP.ungapped.fasta.nog has an unrecognized type

[David Koppstein]

Hi, I was just updating ChangeO to the latest revision and noticed that the MakeDb.py -r parameter is now required; the directory where we keep the germline sequences also has the .nog, .nsi, etc. files as well, so I get ERROR: File TR.J.human.F+ORF+infrP.ungapped.fasta.nog has an unrecognized type. Would it be possible to ignore these files rather than raise an exception?

[Jason Vander Heiden]

I thought we fixed this... We'll check.

[Jason Vander Heiden]

Hrm. Can you updated presto? The problem might be an older version of presto.IO.getFileType().

[David Koppstein]

Thanks for the feedback, indeed I was negligent about updating presto (we keep a requirements.txt file with entries like hg+ssh://[e-mail]/abvitro/changeo/@292#egg=changeo so that the presto and changeo versions are explicitly specified; in the future I will make sure to update both. It appears to work now, thank you!