ERROR: File TR.J.human.F+ORF+infrP.ungapped.fasta.nog has an unrecognized type

Issue #53 resolved
David Koppstein created an issue

Hi, I was just updating ChangeO to the latest revision and noticed that the MakeDb.py -r parameter is now required; the directory where we keep the germline sequences also has the .nog, .nsi, etc. files as well, so I get ERROR: File TR.J.human.F+ORF+infrP.ungapped.fasta.nog has an unrecognized type. Would it be possible to ignore these files rather than raise an exception?

Comments (5)

  1. Jason Vander Heiden

    Hrm. Can you updated presto? The problem might be an older version of presto.IO.getFileType().

  2. David Koppstein reporter

    Thanks for the feedback, indeed I was negligent about updating presto (we keep a requirements.txt file with entries like hg+ssh://hg@bitbucket.org/abvitro/changeo/@292#egg=changeo so that the presto and changeo versions are explicitly specified; in the future I will make sure to update both. It appears to work now, thank you!

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