Overview

There is currently a number public RNA-seq datasets that were applied to discover the fusions.

This page contains the links to the publications and the results of InFusion v0.7.2 for the described datasets.

Edgren et al (breast cancer)

Publication: Edgren et al "Identification of fusion genes in breast cancer by paired-end RNA-sequencing."

Datasets: SRP003186

Results:

• MCF7
• KPL4
• SKBR3
• BT474

Berger et al (melanoma)

Publication: Berger et al "Integrative analysis of the melanoma transcriptome"

Datasets: SRP000931

Results:

• 501Mel
• K562
• M000216
• M000921
• M010403
• M980409
• M990802

Wu et al (prostate cancer)

Publication: Poly-gene fusion transcripts and chromothripsis in prostate cancer

Datasets: SRP013021

Results:

• LNCAP
• LTL313H