malb / algebraic_attacks (http://informatik.uni-bremen.de/~malb/blog.php)
This repository mainly holds code snippets for experimentation with algebraic attacks (and some general crypto code). The quality of this code is not 'release ready' at all. Although the code should work in general there is a lot of scratch, wrong and pathetic code in this repository. Also, some of this code dates back to my Diplomarbeit (master's thesis) and should be considered broken and outdated. By default all code listed here is released under the GPLv2+. Don't hesitate to ping me if you need something under some more permissive license like BSD-style.
Clone this repository (size: 122.6 KB): HTTPS / SSH
$ hg clone http://bitbucket.org/malb/algebraic_attacks/
| commit 35: | ce280e2b1a19 |
| parent 34: | 3dd50c6be752 |
| branch: | default |
| tags: | tip |
fixed a very stupid bug in PRESENT which made the polynomial system unecessarily hard
algebraic_attacks /
f5.py
| r35:ce280e2b1a19 | 1141 loc | 39.5 KB | embed / history / annotate / raw / |
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"""
Jean-Charles Faugère's F5 Algorithm.
These implementations are heavily inspired by John Perry's pseudocode
and Singular implementation of these algorithms.
See http://www.math.usm.edu/perry/Research/ for details.
The docstrings are almost verbatim copies from Just Gash's
explanations for each F5 function in his thesis: "On Efficient
Computation of Gröbner Bases". Note that Justin begins at f_m while
we begin at f_0, e.g. the first GB we calculate is <f_0> while Justin
calculates <f_m> first.
AUTHOR:
-- 20081013 Martin Albrecht (initial version based on John Perry's pseudocode)
-- 20081013 John Perry (loop from 0 to m-1 instead of m-1 to 0)
-- 20090112 Martin Albrecht (F5SansRewriting)
-- 20090124 Martin Albrecht and John Perry (F4F5)
-- 20090126 John Perry (correction to compute_spols)
EXAMPLE:
sage: execfile('f5.py')
sage: R.<x,y,z> = PolynomialRing(GF(29))
sage: I = R* [3*x^4*y + 18*x*y^4 + 4*x^3*y*z + 20*x*y^3*z + 3*x^2*z^3, \
3*x^3*y^2 + 7*x^2*y^3 + 24*y^2*z^3, \
12*x*y^4 + 17*x^4*z + 27*y^4*z + 11*x^3*z^2]
sage: J = I.homogenize()
sage: f5 = F5() # original F5
sage: gb = f5(J)
Increment 1
Processing 1 pairs of degree 7
Processing 1 pairs of degree 9
Processing 1 pairs of degree 11
Increment 2
Processing 1 pairs of degree 6
Processing 2 pairs of degree 7
Processing 5 pairs of degree 8
Processing 7 pairs of degree 9
Processing 11 pairs of degree 10
Processing 10 pairs of degree 11
verbose 0 (...: f5.py, top_reduction) Reduction of 29 to zero.
verbose 0 (...: f5.py, top_reduction) Reduction of 27 to zero.
verbose 0 (...: f5.py, top_reduction) Reduction of 25 to zero.
Processing 3 pairs of degree 12
Processing 5 pairs of degree 13
Processing 2 pairs of degree 14
Processing 1 pairs of degree 16
sage: f5.zero_reductions, len(gb)
(3, 18)
sage: Ideal(gb).basis_is_groebner()
True
sage: f5 = F5R() # F5 with interreduced B
sage: gb = f5(J)
Increment 1
Processing 1 pairs of degree 7
Processing 1 pairs of degree 9
Processing 1 pairs of degree 11
Increment 2
Processing 1 pairs of degree 6
Processing 2 pairs of degree 7
Processing 5 pairs of degree 8
Processing 7 pairs of degree 9
Processing 11 pairs of degree 10
Processing 10 pairs of degree 11
verbose 0 (...: f5.py, top_reduction) Reduction of 29 to zero.
verbose 0 (...: f5.py, top_reduction) Reduction of 27 to zero.
verbose 0 (...: f5.py, top_reduction) Reduction of 25 to zero.
Processing 3 pairs of degree 12
Processing 5 pairs of degree 13
Processing 2 pairs of degree 14
Processing 1 pairs of degree 16
sage: f5.zero_reductions, len(gb)
(3, 18)
sage: Ideal(gb).basis_is_groebner()
True
sage: f5 = F5C() # F5 with interreduced B and Gprev
sage: gb = f5(J)
Increment 1
Processing 1 pairs of degree 7
Processing 1 pairs of degree 9
Processing 1 pairs of degree 11
Increment 2
Processing 1 pairs of degree 6
Processing 2 pairs of degree 7
Processing 5 pairs of degree 8
Processing 7 pairs of degree 9
Processing 11 pairs of degree 10
Processing 10 pairs of degree 11
verbose 0 (...: f5.py, top_reduction) Reduction of 29 to zero.
verbose 0 (...: f5.py, top_reduction) Reduction of 27 to zero.
verbose 0 (...: f5.py, top_reduction) Reduction of 25 to zero.
Processing 3 pairs of degree 12
Processing 4 pairs of degree 13
Processing 1 pairs of degree 14
sage: f5.zero_reductions, len(gb)
(3, 18)
sage: Ideal(gb).basis_is_groebner()
True
sage: f5 = F4F5() # F5-style F5
sage: gb = f5(J)
Increment 1
Processing 1 pairs of degree 7
5 x 13, 5, 0
Processing 1 pairs of degree 9
14 x 29, 14, 0
Processing 1 pairs of degree 11
Increment 2
Processing 1 pairs of degree 6
6 x 18, 6, 0
Processing 2 pairs of degree 7
11 x 23, 11, 0
Processing 5 pairs of degree 8
18 x 27, 18, 0
Processing 7 pairs of degree 9
19 x 23, 19, 0
Processing 11 pairs of degree 10
15 x 15, 15, 0
Processing 10 pairs of degree 11
14 x 11, 11, 3
Processing 3 pairs of degree 12
Processing 4 pairs of degree 13
Processing 1 pairs of degree 14
sage: f5.zero_reductions, len(gb)
(3, 18)
sage: Ideal(gb).basis_is_groebner()
True
NOTE:
For additional diagnostics there are a number of commented
commands. To count the number of reductions, one can uncomment
commands to "interreduce" and comment out commands with
"reduced_basis"; also uncomment commands with "normal_form" and
comment out commands with "reduce".
"""
divides = lambda x,y: x.parent().monomial_divides(x,y)
LCM = lambda f,g: f.parent().monomial_lcm(f,g)
LM = lambda f: f.lm()
LT = lambda f: f.lt()
def compare_by_degree(f,g):
if f.total_degree() > g.total_degree():
return 1
elif f.total_degree() < g.total_degree():
return -1
else:
return cmp(f.lm(),g.lm())
class F5:
"""
Jean-Charles Faugère's F5 Algorithm.
"""
def __init__(self, F=None):
if F is not None:
self.Rules = [[]]
self.L = [0]
self.zero_reductions = 0
self.reductions = 0
def poly(self, i):
return self.L[i][1]
def sig(self, i):
return self.L[i][0]
def __call__(self, F):
if isinstance(F, sage.rings.polynomial.multi_polynomial_ideal.MPolynomialIdeal):
F = F.reduced_basis()
else:
F = Ideal(list(F)).reduced_basis()
if not all(f.is_homogeneous() for f in F):
F = Ideal(F).homogenize()
F = F.gens()
return self.basis(F)
def basis(self, F):
"""
F5's main routine. Computes a Gröbner basis for F.
INPUT:
F -- a list of polynomials
OUTPUT:
G -- a list of polynomials; a Gröbner basis for <F>
"""
poly = self.poly
incremental_basis = self.incremental_basis
self.__init__(F)
Rules = self.Rules
L = self.L
m = len(F)
F = sorted(F, cmp=compare_by_degree)
f0 = F[0]
L[0] = (Signature(1, 0), f0*f0.lc()**(-1))
Rules.append([])
Gprev = set([0])
B = [f0]
for i in xrange(1,m):
print "Increment", i
f = F[i]
L.append( (Signature(1,i), f*f.lc()**(-1)) )
Gcurr = incremental_basis(i, B, Gprev)
if any(poly(lambd) == 1 for lambd in Gcurr):
return set(1)
Gprev = Gcurr
B = [poly(l) for l in Gprev]
#return B
return Ideal([poly(l) for l in Gprev]).reduced_basis()
#return self.interreduce(B)
def incremental_basis(self, i, B, Gprev):
"""
adapted from Justin Gash (p.49):
'This is the portion of the algorithm that is called (m-1)
times and at the end of each call a new Gröbner basis is
produced. After the first call to this algorithm, the
Gröbner basis for <f_0 , f_1> is returned. In general, after
the k-th call to this algorithm, the Gröbner basis for
<f_0,...,f_k>. This is why F5 is called an iterative
algorithm. The process used by this algorithm is similar to
many Gröbner basis algorithms: it moves degree-by-degree; it
generates a new set of S- polynomials S to consider; it
reduces this new set S of S-polynomials by G_curr and
G_prev.'
"""
L = self.L
critical_pair = self.critical_pair
compute_spols = self.compute_spols
reduction = self.reduction
Rules = self.Rules
curr_idx = len(L) - 1
Gcurr = Gprev.union([curr_idx])
Rules.append( list() )
P = reduce(lambda x,y: x.union(y), [critical_pair(curr_idx, j, i, Gprev) for j in Gprev], set())
while len(P) != 0:
d = min(t.degree() for (t,k,u,l,v) in P)
Pd = [(t,k,u,l,v) for (t,k,u,l,v) in P if t.degree() == d]
print "Processing", len(Pd), "pairs of degree", d
#for each in Pd:
# print(each)
P = P.difference(Pd)
S = compute_spols(Pd)
R = reduction(S, B, Gprev, Gcurr)
for k in R:
P = reduce(lambda x,y: x.union(y), [critical_pair(j, k, i, Gprev) for j in Gcurr], P)
Gcurr.add(k)
#print "Ended with", len(Gcurr), "polynomials"
return Gcurr
def critical_pair(self, k, l, i, Gprev):
"""
adapted from Justin Gash (p.51):
'It is the subroutine critical_pair that is responsible for
imposing the F5 Criterion from Theorem 3.3.1. Note that in
condition (3) of Theorem 3.3.1, it is required that all pairs
(r_i, r_j) be normalized. The reader will recall from
Definition 3.2.2 that a pair is normalized if:
(1) S(k) = m_0*F_{e_0} is not top-reducible by <f_0, ..., f_{e_0}-1>
(2) S(l) = m_1*F_{e_1} is not top-reducible by <f_0, ..., f_{e_1}-1>
(3) S(m_0*k) > S(m_1*l)
If these three conditions are not met in critical_pair (note
that the third condition will always be met because
cirtical_pair forces it to be met), the nominated critical
pair is dropped and () is returned.
Once we have collected the nominated critical pairs that pass
the F5 criterion test of critical_pair, we send them to
compute_spols.'
"""
poly = self.poly
sig = self.sig
is_top_reducible = self.is_top_reducible
is_rewritable = self.is_rewritable
#print "crit_pair(%s,%s,%s,%s)"%(k, l, i, Gprev)
#print self.L
tk = poly(k).lt()
tl = poly(l).lt()
t = LCM(tk, tl)
u0 = t//tk
u1 = t//tl
m0, e0 = sig(k)
m1, e1 = sig(l)
if e0 == e1 and u0*m0 == u1*m1:
return set()
# Stegers and Gash leave out the == i check, Faugere and Perry
# have it. It is unclear for now, whether the check is
# necessary.
if e0 == i and is_top_reducible(u0*m0, Gprev):
return set()
if e1 == i and is_top_reducible(u1*m1, Gprev):
return set()
# This check was introduced by Stegers, it isn't strictly
# necessary
if is_rewritable(u0, k) or is_rewritable(u1, l):
return set()
if u0 * sig(k) < u1 * sig(l):
u0, u1 = u1, u0
k, l = l, k
return set([(t,k,u0,l,u1)])
def compute_spols(self, P):
"""
adapted from Justin Gash (p.51):
'Though at first glance this subroutine may look complicated,
compute_spols essentially does one thing: form the new
S-polynomials output from critical_pairs as admissible signed
polynomials. We note that, because critical_pairs ensured
that S(u*k) < S(v*l), we know that the signature of all new
polynomials will always be of the form u_L*S(r_{i_L}) in
compute_spols.'
"""
poly = self.poly
sig = self.sig
spol = self.spol
is_rewritable = self.is_rewritable
add_rule = self.add_rule
L = self.L
S = list()
P = sorted(P, key=lambda x: x[0])
for (t,k,u,l,v) in P:
if not is_rewritable(u,k) and not is_rewritable(v,l):
s = spol(poly(k), poly(l))
L.append( (u * sig(k), s.lc()**-1 * s) )
add_rule(u * sig(k), len(L)-1)
if s != 0:
S.append(len(L)-1)
S = sorted(S, key=lambda x: sig(x))
return S
def spol(self, f, g):
return LCM(LM(f),LM(g)) // LT(f) * f - LCM(LM(f),LM(g)) // LT(g) * g
def reduction(self, S, B, Gprev, Gcurr):
"""
adapted from Justin Gash (p.54ff):
'Let's begin our discussion by focusing our attention to the
outer layer of the reduction subroutine(s): reduction. The
signed polynomial with smallest signature, denoted h, is
grabbed and removed from the todo list of polynomial to be
reduced.
It's normal form, with respect to the previous Gröbner basis,
and other information is sent to the sub-subroutine
top_reduction. If top_reduction determines that the signed
polynomial can be reduced, then nothing will be added to
completed and the reduced (still signed) version of h will be
placed back into todo. If no top reduction is possible, h is
made monic by K-multiplication and the resulting signed
polynomial is placed in completed.
This description of reduction seems very similar to other
reduction routines from other algorithms. The difference lies
in the phrase, "If top_reduction determines that the signed
polynomial can be reduced ..."'
"""
L = self.L
sig = self.sig
poly = self.poly
top_reduction = self.top_reduction
to_do = S
completed = set()
while len(to_do):
#print "Processing", str(k), L[k]
k, to_do = to_do[0], to_do[1:]
h = poly(k).reduce(B)
#h = self.normal_form(poly(k),B)
L[k] = (sig(k), h)
newly_completed, redo = top_reduction(k, Gprev, Gcurr.union(completed))
completed = completed.union( newly_completed )
#if k in newly_completed:
# print "completed", k, "lm", poly(k).lt()
for j in redo:
# insert j in to_do, sorted by increasing signature
to_do.append(j)
to_do.sort(key=lambda x: sig(x))
return completed
def top_reduction(self, k, Gprev, Gcurr):
"""
adapted from Justin Gash (p.55ff):
'We will go through top_reduction step-by-step. If the signed
polynomial being examined has polynomial part 0, then there
is no data left in that particular signed polynomial - an
empty ordered pair is returned. Otherwise top_reduction calls
upon another sub-subroutine find_reductor. Essentially, if
find_reductor comes back negative, the current signed
polynomial is made monic and returned to reduction to be
placed in completed. If a top-reduction is deemed possible,
then there are two possible cases: either the reduction will
increase the signature of polynomial or it won't. In the
latter case, the signature of r_{k_0} is maintained, the
polynomial portion is top-reduced and the signed polynomial
is returned to reduction to be added back into todo; this
case corresponds to top-reduction in previous algorithms.
In the former case, however, the signature will change. This
is marked by adding a new polynomial r_N (our notation here
describes N after N was incremented) with appropriate
signature based upon the reductor, not S(r_{k_0}). A new rule
is added (as I mentioned previously, this will be explained
later) and then both r_{k_0} and r_N are sent back to
reduction to be added back into todo. This is done because
r_N has a different signature than r_{k_0} and r_{k_0} might
still be reducible by another signed polynomial.
"""
from sage.misc.misc import verbose
find_reductor = self.find_reductor
add_rule = self.add_rule
poly = self.poly
sig = self.sig
L = self.L
if poly(k) == 0:
verbose("Reduction of %s to zero."%str(k),level=0)
self.zero_reductions += 1
return set(),set()
p = poly(k)
J = find_reductor(k, Gprev, Gcurr)
if J == set():
L[k] = ( sig(k), p * p.lc()**(-1) )
return set([k]),set()
j = J.pop()
q = poly(j)
u = p.lt()//q.lt()
p = p - u*q
self.reductions += 1
if p != 0:
p = p * p.lc()**(-1)
if u * sig(j) < sig(k):
L[k] = (sig(k), p)
return set(), set([k])
else:
L.append((u * sig(j), p))
add_rule(u * sig(j), len(L)-1)
return set(), set([k, len(L)-1])
def find_reductor(self, k, Gprev, Gcurr):
"""
adapted from Justin Gash (p.56ff):
'For a previously added signed polynomial in G_curr to become
a reductor of r_{k_0}, it must meet four requirements:
(1) u = HT(r_{k_0})/HT(r_{k_j}) \in T
(2) NF(u_{t_j}, G_curr) = u_{t_j}
(3) not is_rewriteable(u, r_{k_j})
(4) u_{t_j} F_{k_j} = S(r_{k_0})
We will go through each requirement one-by-one.
Requirement (1) is simply the normal top-reduction
requirement. The only thing of note here is that, in testing
for the top-reducibility, u is assigned a particular value to
be used in subsequent tests.
Requirement (2) is making sure that the signature of the
reductor is normalized. Recall that we only want signatures
of our polynomials to be normalized - we are discarding
non-normalized S-polynomials. If we ignored this condition
and our re- ductor wound up having larger signature than
S(r_{k_0}), then top_reduction would create a new signed
polynomial with our reductor's non-normalized signature. (We
might add that, if the reductor had smaller signature than
S(r_{k_0}), it would be fine to reduce by it; however, F5
doesn't miss anything by forgoing this opportunity because,
by Lemma 3.2.1 (The Normalization Lemma), there will be
another normalized reductor with the same head term and
smaller signature.)
Requirement (3) will be discussed when we discuss
is_rewriteable. That discussion is approaching rapidly.
Requirement (4) is a check that makes sure we don't reduce by
something that has the same signature as r_{k_0} . Recall
that we want all signed polynomials used during the run of F5
to be admissible. If we reduced by a polynomial that has the
same signature, we would be left with a new polynomial for
which we would have no idea what the signature is. The act of
reduction would have certainly lowered the signature, thus
causing admissibility to be lost. (We will comment on this
requirement later in subsection 3.5. With a little care, we
can loosen this requirement.)
"""
is_rewritable = self.is_rewritable
is_top_reducible = self.is_top_reducible
poly = self.poly
sig = self.sig
t = poly(k).lt()
for j in Gcurr:
tprime = poly(j).lt()
if divides(tprime,t):
u = t // tprime
mj, ej = sig(j)
if u * sig(j) != sig(k) and not is_rewritable(u, j) \
and not is_top_reducible(u*mj, Gprev):
return set([j])
return set()
def is_top_reducible(self, t, l):
"""
Note, that this function test traditional top reduction and
not top_reduction as implemented in the function with the same
name of this class.
"""
R = t.parent()
poly = self.poly
for g in l:
if R.monomial_divides(poly(g).lm(),t):
return True
return False
def add_rule(self, s, k):
self.Rules[s[1]].append( (s[0],k) )
def is_rewritable(self, u, k):
j = self.find_rewriting(u, k)
return j != k
def find_rewriting(self, u, k):
"""
adapted from Justin Gash (p.57):
'find_rewriting gives us information to be used as an
additional criterion for eliminating critical pairs. Proof of
this fact is given in section 3.4.3. In short, we could
remove all discussion of rules and find_rewriting and F5
would work fine. (But it would work much more slowly.) So we
will treat these final four subroutines as a separate module
that works in conjunction with F5, but is not an official
part of the F5 criteria per se.'
"""
Rules = self.Rules
mk, v = self.sig(k)
for ctr in reversed(xrange(len(Rules[v]))):
mj, j = Rules[v][ctr]
if divides(mj, u * mk):
return j
return k
class F5R(F5):
def basis(self, F):
"""
F5's main routine. Computes a Gröbner basis for F.
INPUT:
F -- a list of polynomials
OUTPUT:
G -- a list of polynomials; a Gröbner basis for <F>
"""
poly = self.poly
incremental_basis = self.incremental_basis
self.__init__(F)
Rules = self.Rules
L = self.L
m = len(F)
F = sorted(F, cmp=compare_by_degree)
f0 = F[0]
L[0] = (Signature(1, 0), f0*f0.lc()**(-1))
Rules.append(list())
Gprev = set([0])
B = [f0]
for i in xrange(1, m):
print "Increment", i
f = F[i]
L.append( (Signature(1,i), f*f.lc()**(-1)) )
Gcurr = incremental_basis(i, B, Gprev)
if any(poly(lambd) == 1 for lambd in Gcurr):
return set(1)
Gprev = Gcurr
B = Ideal([poly(l) for l in Gprev]).reduced_basis()
#B = self.interreduce([poly(l) for l in Gprev])
return B
def interreduce(self, RF):
"""
interreduce RF and count the number of reductions performed.
INPUT:
RF -- a list of polynomial
"""
F = list(RF)
for each in xrange(len(F)):
F[each] = F[each]*F[each].lc()**(-1)
i = 0
while i < len(F):
reduceme = F.pop(0)
reduced = False
for j in xrange(len(F)):
quo, rem = self.divide(reduceme,F[j])
reduceme = rem
if (quo != 0) and (rem != 0):
reduceme = rem*rem.lc()**(-1)
j = -1
reduced = True
if (reduceme != 0):
F.append(reduceme)
if reduced:
i = -1
i = i + 1
return F
def normal_form(self, f, B):
"""
Compute the normal form of f w.r.t. B and count the number of
reductions.
INPUT:
f -- a polynomial
B -- a set of polynomials
"""
remainder = f
quotient = [0 for each in B]
i = 0
while i < len(B):
quo, rem = self.divide(remainder, B[i])
remainder = rem
if quo != 0:
i = -1
i = i + 1
return remainder
def divide(self,dividend, divisor):
"""
Divide dividend by divisor and count number of reductions.
INPUT:
dividend -- a polynomial
divisor -- a polynomial
"""
remainder = dividend
quotient = 0
mons = remainder.monomials()
coeffs = remainder.coefficients()
t = divisor.lm()
c = divisor.lc()
i = 0
while (remainder != 0) and (i < len(mons)):
if t.divides(mons[i]):
self.reductions += 1
quotient = quotient + (mons[i]/t*coeffs[i]/c).numerator()
remainder = remainder - (mons[i]/t*coeffs[i]/c*divisor).numerator()
mons = remainder.monomials()
coeffs = remainder.coefficients()
else:
i = i + 1
return quotient, remainder
class F5C(F5):
def basis(self, F):
"""
F5's main routine. Computes a Gröbner basis for F.
INPUT:
F -- a list of polynomials
OUTPUT:
G -- a list of polynomials; a Gröbner basis for <F>
"""
incremental_basis = self.incremental_basis
poly = self.poly
self.__init__(F)
Rules = self.Rules
L = self.L
m = len(F)
F = sorted(F, cmp=compare_by_degree)
f0 = F[0]
L[0] = (Signature(1, 0), f0*f0.lc()**(-1))
Rules.append(list())
Gprev = set([0])
B = set([f0])
for i in xrange(1, m):
print "Increment", i
f = F[i]
L.append( (Signature(1,len(L)), f*f.lc()**(-1)) )
Gcurr = incremental_basis(len(L)-1, B, Gprev)
if any(poly(lambd) == 1 for lambd in Gcurr):
return set(1)
B = Ideal([poly(l) for l in Gcurr]).reduced_basis()
#B = self.interreduce([poly(l) for l in Gcurr])
if i != m-1:
Gprev = self.setup_reduced_basis(B)
return B
def setup_reduced_basis(self, B):
"""
Update the global L and Rules to match the reduced basis B.
OUTPUT:
Gcurr -- index set for B
"""
add_rule = self.add_rule
L = self.L
Rules = self.Rules
# we don't want to replace L but modify it
L[:] = [(Signature(1,i), f) for i,f in enumerate(B)]
Rules[:] = [[] for _ in xrange(len(B))]
Gcurr = set()
for i,f in enumerate(B):
Gcurr.add( i )
t = B[i].lt()
for j in xrange(i+1, len(B)):
fjlt = B[j].lt()
u = LCM(t, fjlt)//fjlt
add_rule( Signature(u, j), -1 )
return Gcurr
class F4F5(F5C):
#class F4F5(F5):
"""
F4-Style F5
Till Steger's calls this F4.5. We don't know how Jean-Charles
Faugère calls it.
"""
def reduction(self, S, B, Gprev, Gcurr):
"""
INPUT:
S -- a list of components of S-polynomials
B -- ignored
Gprev -- the previous Gröbner basis indexed in L
Ccurr -- the Gröbner basis computed so far indexed in L
"""
L = self.L
add_rule = self.add_rule
poly = self.poly
S = self.symbolic_preprocessing(S, Gprev, Gcurr)
St = self.gauss_elimination(S)
Ret = []
for k, (s,p,idx) in enumerate(St):
if (s,p,idx) == S[k] and idx == -1:
continue # ignore unchanged new polynomials
if idx >= 0:
L[idx] = L[idx][0], p # update p
if p != 0:
Ret.append(idx)
else:
L.append( (s,p) ) # we have a new polynomial
add_rule( s, len(L)-1 )
if p != 0:
Ret.append(len(L)-1)
return Ret
def symbolic_preprocessing(self,S, Gprev, Gcurr):
"""
Add polynomials to the set S such that all possible reductors
for all elements in S are available.
INPUT:
S -- a list of components of S-polynomials
Gprev -- the previous Gröbner basis indexed in L
Ccurr -- the Gröbner basis computed so far indexed in L
"""
poly = self.poly
L = self.L
find_reductor = self.find_reductor
# We add a new marker for each polynomial which encodes
# whether the polynomial was added by this routine or is an
# original input polynomial.
F = [L[k]+(k,) for k in S]
Done = set()
# the set of all monomials
M = set([m for f in F for m in f[1].monomials()])
while M != Done:
m = M.difference(Done).pop()
Done.add(m)
t, g = find_reductor(m, Gprev, Gcurr)
if t!=0:
F.append( (t*g[0], t*g[1], -1) )
M = M.union((t*g[1]).monomials())
return sorted(F, key=lambda f: f[0]) # sort by signature
def find_reductor(self, m, Gprev, Gcurr):
r"""
Find a reductor $g_i$ for $m$ in $G_{prev}$ and $G_{curr}$ subject
to the following contraint. is a
* the leading monomial of $g_i$ divides $m$
* $g_i \in G_{prev}$ is preferred over $g_i \in G_{curr}$
* if $g_i \in G_{curr}$ then
* $g_i$ is not rewritable
* $g_i$ is not top reducible by $G_prev$
INPUT:
m -- a monomial
Gprev -- the previous Gröbner basis indexed in L
Ccurr -- the Gröbner basis computed so far indexed in L
"""
is_rewritable = self.is_rewritable
is_top_reducible = self.is_top_reducible
sig = self.sig
poly = self.poly
L = self.L
R = m.parent()
for k in Gprev:
if R.monomial_divides(poly(k).lm(),m):
return R.monomial_quotient(m,poly(k).lm()), L[k]
for k in Gcurr:
if R.monomial_divides(poly(k).lm(),m):
t = R.monomial_quotient(m,poly(k).lm())
if is_rewritable(t, k):
continue
if is_top_reducible(t * sig(k)[0], Gprev):
continue
return t, L[k]
return 0, -1
def gauss_elimination(self, F1):
"""
Perform permuted Gaussian elimination on F1.
INPUT:
F1 -- a list of tuples (sig, poly, idx)
"""
F = [f[1] for f in F1]
if len(F) == 0:
return F
A,v = mq.MPolynomialSystem(F).coefficient_matrix()
self.zero_reductions += A.nrows()-A.rank()
print "%4d x %4d, %4d, %4d"%(A.nrows(), A.ncols(), A.rank(), A.nrows()-A.rank())
nrows, ncols = A.nrows(), A.ncols()
for c in xrange(ncols):
for r in xrange(0,nrows):
if A[r,c] != 0:
if any(A[r,i] for i in xrange(c)):
continue
a_inverse = ~A[r,c]
A.rescale_row(r, a_inverse, c)
for i in xrange(r+1,nrows):
if A[i,c] != 0:
if any(A[i,_] for _ in xrange(c)):
continue
minus_b = -A[i,c]
A.add_multiple_of_row(i, r, minus_b, c)
break
F = (A*v).list()
return [(F1[i][0],F[i],F1[i][2]) for i in xrange(len(F))]
class F5SansRewriting(F5):
"""
A variant of F5 which does not use the rewriting rule. This is
motivated by the following observation by Justin Gash (p.57):
'Rewritten gives us information to be used as an additional
criterion for eliminating critical pairs. Proof of this fact is
given in section 3.4.3. In short, we could remove all discussion
of rules and Rewritten and F5 would work fine. (But it would work
much more slowly.) So we will treat these final four subroutines
as a separate module that works in conjunction with F5, but is
not an official part of the F5 criteria per se.'
"""
def critical_pair(self, k, l, i, Gprev):
"""
adapted from Justin Gash (p.51):
'It is the subroutine critical_pair that is responsible for
imposing the F5 Criterion from Theorem 3.3.1. Note that in
condition (3) of Theorem 3.3.1, it is required that all pairs
(r_i, r_j) be normalized. The reader will recall from
Definition 3.2.2 that a pair is normalized if:
(1) S(k) = m_0*F_{e_0} is not top-reducible by <f_0, ..., f_{e_0}-1>
(2) S(l) = m_1*F_{e_1} is not top-reducible by <f_0, ..., f_{e_1}-1>
(3) S(m_0*k) > S(m_1*l)
If these three conditions are not met in critical_pair (note
that the third condition will always be met because
cirtical_pair forces it to be met), the nominated critical
pair is dropped and () is returned.
Once we have collected the nominated critical pairs that pass
the F5 criterion test of critical_pair, we send them to
compute_spols.'
"""
poly = self.poly
sig = self.sig
is_top_reducible = self.is_top_reducible
tk = poly(k).lt()
tl = poly(l).lt()
t = LCM(tk, tl)
u0 = t//tk
u1 = t//tl
m0, e0 = sig(k)
m1, e1 = sig(l)
if e0 == e1 and u0*m0 == u1*m1:
return set()
# Stegers and Gash leave out the == i check, Faugere and Perry
# have it. It is unclear for now, whether the check is
# necessary.
if e0 == i and is_top_reducible(u0*m0, Gprev):
return set()
if e1 == i and is_top_reducible(u1*m1, Gprev):
return set()
if u0 * sig(k) < u1 * sig(l):
u0, u1 = u1, u0
k, l = l, k
return set([(t,k,u0,l,u1)])
def compute_spols(self, P):
"""
adapted from Justin Gash (p.51):
'Though at first glance this subroutine may look complicated,
compute_spols essentially does one thing: form the new
S-polynomials output from critical_pairs as admissible signed
polynomials. We note that, because critical_pairs ensured
that S(u*k) < S(v*l), we know that the signature of all new
polynomials will always be of the form u_L*S(r_{i_L}) in
compute_spols.'
"""
poly = self.poly
sig = self.sig
spol = self.spol
L = self.L
S = list()
P = sorted(P, key=lambda x: x[0])
for (t,k,u,l,v) in P:
s = spol(poly(k), poly(l))
if s != 0:
L.append( (u * sig(k), s) )
S.append(len(L)-1)
S = sorted(S, key=lambda x: sig(x))
return S
def top_reduction(self, k, Gprev, Gcurr):
"""
adapted from Justin Gash (p.55ff):
'We will go through top_reduction step-by-step. If the signed
polynomial being examined has polynomial part 0, then there
is no data left in that particular signed polynomial - an
empty ordered pair is returned. Otherwise top_reduction calls
upon another sub-subroutine find_reductor. Essentially, if
find_reductor comes back negative, the current signed
polynomial is made monic and returned to reduction to be
placed in completed. If a top-reduction is deemed possible,
then there are two possible cases: either the reduction will
increase the signature of polynomial or it won't. In the
latter case, the signature of r_{k_0} is maintained, the
polynomial portion is top-reduced and the signed polynomial
is returned to reduction to be added back into todo; this
case corresponds to top-reduction in previous algorithms.
In the former case, however, the signature will change. This
is marked by adding a new polynomial r_N (our notation here
describes N after N was incremented) with appropriate
signature based upon the reductor, not S(r_{k_0}). A new rule
is added (as I mentioned previously, this will be explained
later) and then both r_{k_0} and r_N are sent back to
reduction to be added back into todo. This is done because
r_N has a different signature than r_{k_0} and r_{k_0} might
still be reducible by another signed polynomial.
"""
from sage.misc.misc import verbose
find_reductor = self.find_reductor
poly = self.poly
sig = self.sig
L = self.L
if poly(k) == 0:
verbose("Reduction of %s to zero."%str(k),level=0)
self.zero_reductions += 1
return set(),set()
p = poly(k)
J = find_reductor(k, Gprev, Gcurr)
if J == set():
L[k] = ( sig(k), p * p.lc()**(-1) )
return set([k]),set()
j = J.pop()
q = poly(j)
u = p.lt()//q.lt()
p = p - u*q
if p != 0:
p = p * p.lc()**(-1)
if u * sig(j) < sig(k):
L[k] = (sig(k), p)
return set(), set([k])
else:
L.append((u * sig(j), p))
return set(), set([k, len(L)-1])
def find_reductor(self, k, Gprev, Gcurr):
"""
adapted from Justin Gash (p.56ff):
'For a previously added signed polynomial in G_curr to become
a reductor of r_{k_0}, it must meet four requirements:
(1) u = HT(r_{k_0})/HT(r_{k_j}) \in T
(2) NF(u_{t_j}, G_curr) = u_{t_j}
...
(4) u_{t_j} F_{k_j} = S(r_{k_0})
We will go through each requirement one-by-one.
Requirement (1) is simply the normal top-reduction
requirement. The only thing of note here is that, in testing
for the top-reducibility, u is assigned a particular value to
be used in subsequent tests.
Requirement (2) is making sure that the signature of the
reductor is normalized. Recall that we only want signatures
of our polynomials to be normalized - we are discarding
non-normalized S-polynomials. If we ignored this condition
and our re- ductor wound up having larger signature than
S(r_{k_0}), then top_reduction would create a new signed
polynomial with our reductor's non-normalized signature. (We
might add that, if the reductor had smaller signature than
S(r_{k_0}), it would be fine to reduce by it; however, F5
doesn't miss anything by forgoing this opportunity because,
by Lemma 3.2.1 (The Normalization Lemma), there will be
another normalized reductor with the same head term and
smaller signature.)
...
Requirement (4) is a check that makes sure we don't reduce by
something that has the same signature as r_{k_0} . Recall
that we want all signed polynomials used during the run of F5
to be admissible. If we reduced by a polynomial that has the
same signature, we would be left with a new polynomial for
which we would have no idea what the signature is. The act of
reduction would have certainly lowered the signature, thus
causing admissibility to be lost. (We will comment on this
requirement later in subsection 3.5. With a little care, we
can loosen this requirement.)
"""
is_top_reducible = self.is_top_reducible
poly = self.poly
sig = self.sig
t = poly(k).lt()
for j in Gcurr:
tprime = poly(j).lt()
if divides(tprime,t):
u = t // tprime
mj, ej = sig(j)
if u * sig(j) != sig(k) and not is_top_reducible(u*mj, Gprev):
return set([j])
return set()
from UserList import UserList
class Signature(UserList):
def __init__(self, multiplier, index):
"""
Create a new signature from the mulitplier and the index.
"""
UserList.__init__(self, (multiplier, index))
def __lt__(self, other):
"""
"""
if self[1] < other[1]:
return True
elif self[1] > other[1]:
return False
else:
return (self[0] < other[0])
def __eq__(self, other):
return self[0] == other[0] and self[1] == other[1]
def __neq__(self, other):
return self[0] != other[0] or self[1] != other[1]
def __rmul__(self, other):
if isinstance(self, Signature):
return Signature(other * self[0], self[1])
else:
raise TypeError
def __hash__(self):
return hash(self[0]) + hash(self[1])
f5 = F5()
f5r = F5R()
f5c = F5C()
ff = F4F5()
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