MetaMLST /

Filename Size Date modified Message
cmseq [266ff36645a4]
44 B
adding cmseq subrepo, hgignore
47 B
adding cmseq subrepo, hgignore
142 B
Added tag 1.2 for changeset 84b636639ba3
1.6 KB
README.md edited online with Bitbucket
1.1 KB
database update, python3 support, fixed bug in consensus calling, pysam 0.14, db deleted from repo (-> downloads)
5.9 KB
-
15.2 KB
consensus-list-cast bugfix
11.8 KB
adding cmseq subrepo, hgignore
21.0 KB
database update, python3 support, fixed bug in consensus calling, pysam 0.14, db deleted from repo (-> downloads)
11.9 KB
adding cmseq subrepo, hgignore
10.7 KB
database update, python3 support, fixed bug in consensus calling, pysam 0.14, db deleted from repo (-> downloads)

MetaMLST

A computational pipeline for MLST typing from metagenomic data

MetaMLST is a software tool that performs an in-silico Multi Locus Sequence Typing (MLST) Analysis on metagenomic samples. MetaMLST achieves cultivation- and assembly- free strain level tracking and detects all the species to which the standard MLST protocol is applicable.

What can I use MetaMLST for?

  • Strain level identification
  • Microbial population analysis

How it works?

MetaMLST works by reconstructing the MLST loci-sequences using the closest reference from the publicly available datsets (PubMLST) and traces the most abundant strain of each species: MetaMLST pipeline schema

How can I use it?

Please refer to the Wiki for the documentation. You can also try the examples.

Where can I get support?

Publications