MetaMLST /

Filename Size Date modified Message
examples
old_dbs
97 B
The initial release
1.5 KB
README.md edited online with Bitbucket
1.1 KB
5.9 KB
-
13.9 KB
added filtering on metamlst-index
10.1 KB
added filtering on metamlst-index
20.7 KB
added db check
11.7 KB
Added backwards samtools compatibility (<1.x), bugfixes
87.7 MB
added isimlst (mlst-on-genome), updated DB (2017) and bugfixes
10.0 KB
Added backwards samtools compatibility (<1.x), bugfixes

MetaMLST

A computational pipeline for MLST typing from metagenomic data

MetaMLST is a software tool that performs an in-silico Multi Locus Sequence Typing (MLST) Analysis on metagenomic samples. MetaMLST achieves cultivation- and assembly- free strain level tracking and detects all the species to which the standard MLST protocol is applicable.

What can I use MetaMLST for?

  • Strain level identification
  • Microbial population analysis

How it works?

MetaMLST works by reconstructing the MLST loci-sequences using the closest reference from the publicly available datsets (PubMLST) and traces the most abundant strain of each species: MetaMLST pipeline schema

How can I use it?

Please refer to the Wiki for the documentation.

Where can I get support?

Publications