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--strain_hit_genes_perc - Overlap of gene-families between samples-strains and reference genomes

By adding the option --strain_hit_genes_perc result_genes_per_strain.csv, we get the percentage of how many gene-families are common between detected strains and reference genomes. In our tutorial example, all detected strains share less than 70% genes, which shows that they are distinct form known reference genomes.

head result_genes_per_strain.csv

strainID  number_of_genes SRS013951 SRS014459 SRS015065 SRS019161
CP001107    3420           58.4      60.8      61.2      56.3
FP929042    2879           68.8      67.4      67.6      67.2
FP929043    3182           66.7      61.1      61.5      64.7

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