TestData {MORE}R Documentation

Omic Data

Description

This file is composed of four objects and can be used to test the MORE algorithm: gene expression matrix, association matrix, data omics matrix and the experimental design matrix.

Usage

data(TestData)

Format

TestData contains the following four lists:

GeneExpressionDE

It contains the counts of gene expression of each gene for the omic RNA-seq.

data.omics

It contains three data matrices with the expression values (count values) for each considered omic (ChIP-seq, miRNA-seq, TF).

edesign

It is the experimental design matrix and it is composed of 8 time points in two conditions, therefore, we ave 16 experimental samples.

associations

It contains three association matrices for each omic (potential regulators).

Details

The count values for ChIP-seq are categorize, therefore, there are value 1 or 0 (1 if the TF analysed in the ChIP-seq experiment binds to the gene and 0 if not). However, the count values for miRNA-seq and TF omics are not categorize.

Source

https://bitbucket.org/ConesaLab/mosim/


[Package MORE version 0.1.0 Index]