ffeatools.modules.FFEA_script.FFEA_script_params Class Reference

Public Member Functions

def __init__ (self)
 
def assign_param (self, lvalue, rvalue, scriptdir=".")
 
def check_params (self)
 
def fix_params (self)
 
def completed (self)
 
def test_traj (self)
 
def write_to_file (self, fout, fname, verbose=False)
 

Data Fields

 restart
 
 dt
 
 kT
 
 rng_seed
 
 kt
 
 check
 
 num_steps
 
 trajectory_out_fname
 
 measurement_out_fname
 
 vdw_forcefield_params
 
 kinetics_out_fname
 
 binding_site_params
 
 beads_out_fname
 
 checkpoint_in
 
 checkpoint_out
 
 epsilon
 
 max_iterations_cg
 
 kappa
 
 epsilon_0
 
 dielec_ext
 
 calc_stokes
 
 stokes_visc
 
 calc_vdw
 
 calc_noise
 
 calc_springs
 
 calc_ctforces
 
 inc_self_vdw
 
 vdw_cutoff
 
 calc_preComp
 
 calc_es
 
 calc_kinetics
 
 kinetics_update
 
 es_update
 
 es_N
 
 vdw_type
 
 vdw_steric_factor
 
 move_into_box
 
 sticky_wall_xz
 
 wall_x_1
 
 wall_x_2
 
 wall_y_1
 
 wall_y_2
 
 wall_z_1
 
 wall_z_2
 
 es_h
 
 num_blobs
 
 num_conformations
 
 num_states
 

Constructor & Destructor Documentation

§ __init__()

def ffeatools.modules.FFEA_script.FFEA_script_params.__init__ (   self)

Member Function Documentation

§ assign_param()

def ffeatools.modules.FFEA_script.FFEA_script_params.assign_param (   self,
  lvalue,
  rvalue,
  scriptdir = "." 
)

§ check_params()

def ffeatools.modules.FFEA_script.FFEA_script_params.check_params (   self)

§ completed()

def ffeatools.modules.FFEA_script.FFEA_script_params.completed (   self)

§ fix_params()

def ffeatools.modules.FFEA_script.FFEA_script_params.fix_params (   self)

§ test_traj()

def ffeatools.modules.FFEA_script.FFEA_script_params.test_traj (   self)

§ write_to_file()

def ffeatools.modules.FFEA_script.FFEA_script_params.write_to_file (   self,
  fout,
  fname,
  verbose = False 
)

Field Documentation

§ beads_out_fname

ffeatools.modules.FFEA_script.FFEA_script_params.beads_out_fname

§ binding_site_params

ffeatools.modules.FFEA_script.FFEA_script_params.binding_site_params

§ calc_ctforces

ffeatools.modules.FFEA_script.FFEA_script_params.calc_ctforces

§ calc_es

§ calc_kinetics

ffeatools.modules.FFEA_script.FFEA_script_params.calc_kinetics

§ calc_noise

§ calc_preComp

ffeatools.modules.FFEA_script.FFEA_script_params.calc_preComp

§ calc_springs

ffeatools.modules.FFEA_script.FFEA_script_params.calc_springs

§ calc_stokes

§ calc_vdw

§ check

§ checkpoint_in

ffeatools.modules.FFEA_script.FFEA_script_params.checkpoint_in

§ checkpoint_out

ffeatools.modules.FFEA_script.FFEA_script_params.checkpoint_out

§ dielec_ext

§ dt

§ epsilon

§ epsilon_0

§ es_h

§ es_N

§ es_update

§ inc_self_vdw

ffeatools.modules.FFEA_script.FFEA_script_params.inc_self_vdw

§ kappa

§ kinetics_out_fname

ffeatools.modules.FFEA_script.FFEA_script_params.kinetics_out_fname

§ kinetics_update

ffeatools.modules.FFEA_script.FFEA_script_params.kinetics_update

§ kT

§ kt

ffeatools.modules.FFEA_script.FFEA_script_params.kt

§ max_iterations_cg

ffeatools.modules.FFEA_script.FFEA_script_params.max_iterations_cg

§ measurement_out_fname

ffeatools.modules.FFEA_script.FFEA_script_params.measurement_out_fname

§ move_into_box

ffeatools.modules.FFEA_script.FFEA_script_params.move_into_box

§ num_blobs

§ num_conformations

§ num_states

ffeatools.modules.FFEA_script.FFEA_script_params.num_states

§ num_steps

§ restart

§ rng_seed

§ sticky_wall_xz

ffeatools.modules.FFEA_script.FFEA_script_params.sticky_wall_xz

§ stokes_visc

§ trajectory_out_fname

§ vdw_cutoff

§ vdw_forcefield_params

ffeatools.modules.FFEA_script.FFEA_script_params.vdw_forcefield_params

§ vdw_steric_factor

ffeatools.modules.FFEA_script.FFEA_script_params.vdw_steric_factor

§ vdw_type

§ wall_x_1

ffeatools.modules.FFEA_script.FFEA_script_params.wall_x_1

§ wall_x_2

ffeatools.modules.FFEA_script.FFEA_script_params.wall_x_2

§ wall_y_1

ffeatools.modules.FFEA_script.FFEA_script_params.wall_y_1

§ wall_y_2

ffeatools.modules.FFEA_script.FFEA_script_params.wall_y_2

§ wall_z_1

ffeatools.modules.FFEA_script.FFEA_script_params.wall_z_1

§ wall_z_2

ffeatools.modules.FFEA_script.FFEA_script_params.wall_z_2

The documentation for this class was generated from the following file: