1. Ted Liefeld
  2. Combined
  3. Issues
Issue #175 on hold

dragged tab file from Gs-dev (gsuitest) to GP and it barfed (aka internalError.jsp)

Barbara Hill
created an issue

the log is complaining that bhill does not have read permission for that file, but I'm in gs-public, with whom that file is shared read-only, or at least I assume I am, since I can see the file when logged in as bhill...

Do you need write permission to use in GP - is the problem that it's trying to convert to gct? and thus needs write permission?

2012-05-10 14:38:41.625 ERROR [http-8080-Processor20] (HibernateSessionRequestFilter.java:51) - javax.servlet.ServletException: Client response status: 403 2012-05-10 14:38:41.627 ERROR [http-8080-Processor20] (StandardWrapperValve.java:253) - Servlet.service() for servlet Faces Servlet threw exception com.sun.jersey.api.client.UniformInterfaceException: Client response status: 403 at com.sun.jersey.api.client.WebResource.handle(WebResource.java:676) at com.sun.jersey.api.client.WebResource.access$200(WebResource.java:74) at com.sun.jersey.api.client.WebResource$Builder.get(WebResource.java:503) at org.genomespace.client.DataManagerClientImpl.getMetadata(DataManagerClientImpl.java:777) at org.genepattern.server.genomespace.impl.GenomeSpaceClientImpl.obtainMetadata(GenomeSpaceClientImpl.java:530) at org.genepattern.server.genomespace.GenomeSpaceFileManager.createFile(GenomeSpaceFileManager.java:90) at org.genepattern.server.genomespace.GenomeSpaceFileManager.createFile(GenomeSpaceFileManager.java:45) at org.genepattern.server.genomespace.GenomeSpaceBean.getFile(GenomeSpaceBean.java:541) at org.genepattern.server.genomespace.GenomeSpaceBean.getFile(GenomeSpaceBean.java:571) at org.genepattern.server.genomespace.GenomeSpaceReceiveBean.parseParameters(GenomeSpaceReceiveBean.java:67) at org.genepattern.server.genomespace.GenomeSpaceReceiveBean.getReceivedFiles(GenomeSpaceReceiveBean.java:100) at org.genepattern.server.genomespace.GenomeSpaceReceiveBean.getRefreshPage(GenomeSpaceReceiveBean.java:41) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at javax.el.BeanELResolver.getValue(BeanELResolver.java:218) at javax.el.CompositeELResolver.getValue(CompositeELResolver.java:135) at com.sun.faces.el.FacesCompositeELResolver.getValue(FacesCompositeELResolver.java:62) at com.sun.el.parser.AstValue.getValue(AstValue.java:117) at com.sun.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:192) at com.sun.facelets.el.ELText$ELTextVariable.writeText(ELText.java:184) at com.sun.facelets.el.ELText$ELTextComposite.writeText(ELText.java:108) at com.sun.facelets.compiler.TextInstruction.write(TextInstruction.java:45) at com.sun.facelets.compiler.UIInstructions.encodeBegin(UIInstructions.java:39) at com.sun.facelets.compiler.UILeaf.encodeAll(UILeaf.java:149) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:889) at com.sun.facelets.FaceletViewHandler.renderView(FaceletViewHandler.java:578) at org.ajax4jsf.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:100) at org.ajax4jsf.application.AjaxViewHandler.renderView(AjaxViewHandler.java:176) at com.sun.faces.lifecycle.RenderResponsePhase.execute(RenderResponsePhase.java:133) at com.sun.faces.lifecycle.LifecycleImpl.phase(LifecycleImpl.java:244) at com.sun.faces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:140) at javax.faces.webapp.FacesServlet.service(FacesServlet.java:245) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.apache.myfaces.webapp.filter.ExtensionsFilter.doFilter(ExtensionsFilter.java:144) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.genepattern.server.webapp.HibernateSessionRequestFilter.doFilter(HibernateSessionRequestFilter.java:35) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.genepattern.server.webapp.AuthorizationFilter.doFilter(AuthorizationFilter.java:73) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.genepattern.server.webapp.AuthenticationFilter.doFilter(AuthenticationFilter.java:128) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.genepattern.server.webapp.RegistrationFilter.doFilter(RegistrationFilter.java:41) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.genepattern.server.webapp.ConnectionFilter.doFilter(ConnectionFilter.java:48) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.genepattern.server.webapp.RedirectToFQHostFilter.doFilter(RedirectToFQHostFilter.java:96) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148) at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:664) at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:527) at org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:80) at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684) at java.lang.Thread.run(Thread.java:619)

Comments (6)

  1. Thorin Tabor

    I have been testing this error and it looks to be due to improper handling of spaces in GS URLs on GP's end rather than anything to do with being a shared file.

  2. Log in to comment