igraph 1.0 leads to "error in x$dist operator is invalid for atomic vectors" for cnapath

[Former user]

Hi, I upgraded my igraph package from 0.7 to igraph_1.0 and then found it gave error in the title when I used cnapath:

path <- cnapath(nets[[10]], from=61, to=200,k=50)

I'm guessing this is something to do with the output the new version of igraph returns to cnapath from the shortest.path function? I downgraded to 0.7 and it all works fine again.

Cheers,

Alistair

[Barry Grant]

Thanks Alistair, thats very helpful!

We will fix this now and also likely need to make some additional checks and changes (once the new igraph version clears some of the Errors and Warnings on CRAN: http://cran.r-project.org/web/checks/check_results_igraph.html )

All best, Barry

[Barry Grant]

Update dependency list to new igraph version once this version clears CRAN.

[Xinqiu Yao]

Thanks. I will do that after igraph 1.0 becomes stable.

[Xinqiu Yao]

Hi,

The cnapath() function has been updated to adapt igraph v1.0 (see this commit)

To get this update, download the latest version of bio3d from the Master branch (See an instruction here).

Let me know if you have any problem!

[Xinqiu Yao]

Fixed by recent update