dssp error

[George Tzotzos]

I obtain - recurrently - the following error upon issuing the command: sse <- dssp(pdb)

Error in dssp.pdb(pdb) : An error occurred while running command 'dssp /var/folders/j2/zlmchtx579b5cx4213hjn8hc0000gn/T//RtmpjzBEH4/file3941ffd32ab /var/folders/j2/zlmchtx579b5cx4213hjn8hc0000gn/T//RtmpjzBEH4/file394280988f5'

The pdb file is loaded correctly

I'm using R 3.1.0 GUI 1.64 Mavericks build (6734) on OSX 10.11.1 (El Capitan)

Any help would be greatly appreciated

Thanks in advance

[Lars Skjærven]

Do you have dssp installed? e.g. can you call dssp like this:

> system("dssp")

Also, check the content of the tempfiles.

[George Tzotzos]

Thank you. It was an installation problem.

Apologies for the late response