Dynamic cross-correlation map (DCCM)

[Former user]

I am new user of Bio3D.I would like to have Dynamic cross-correlation map (DCCM) from gromacs trajectory. In Bio3D example I see it supports charmm/namd dcd format.Please let me know how would I be able to construct the DCCM map using the ‘bio3d’ module of the R base analysis tool from exclusively using gromacs trajectory .xtc/.trr format.

Thank you Soumi Das

[Lars Skjærven]

Hi Soumi, Bio3d can only read dcd or netcdf trajectories. You can try to convert your trajectory, e.g. through VMD. Hope it helps. Lars

[Soumi Das]

Thank you very much.