Plot error in trajectory analysis
Issue #417
resolved
I am new to R. I would appreciate your patience.
I am mainly interested in PCA, NMA and network analysis.
I am also encountering plotting error.
Tutorial I am trying is: http://thegrantlab.org/bio3d/vignettes/Bio3D_md.pdf
Similar plotting error occurred more than once in different command.
I am listing error below.
Tutorial Error:
> rd <-rmsd(xyz[1, ca.inds$xyz], xyz[,ca.inds$xyz])
> plot(rd, typ="1", ylab="RMSD", xlab="Frame No.")
Error in plot.xy(xy, type, ...) : invalid plot type '1'
>
points(lowess(rd), typ="1", col="red", lty=2, lwd=2)
Error in plot.xy(xy.coords(x, y), type = type, ...) :
plot.new has not been called yet
> plot(rd, typ="1", ylab="RMSD", xlab="Frame No.")
Error in plot.xy(xy, type, ...) : invalid plot type '1'
> points(lowess(rd), typ="1", col="red", lty=2, lwd=2)
Error in plot.xy(xy.coords(x, y), type = type, ...) :
invalid plot type '1'
> plot.bio3d(pc$au[,1], ylab="PC1 (A)", xlab="Residue Position", typ="1")
Error in plot.xy(xy.coords(x, y), type = type, ...) :
invalid plot type '1'
> plot.bio3d(pc$au[,2], typ="1", col="blue")
Error in plot.xy(xy.coords(x, y), type = type, ...) :
invalid plot type '1'
> pymol.dccm(cij, pdb, type="launch")
Error: could not find function "pymol.dccm"
Comments (4)
-
-
You have typed all the letter 'l' by the number '1' in
typ='l'
. -
reporter Thankyou.
-
- changed status to resolved
- Log in to comment