missing nma
Hi,
There seems to a missing module nma.
for command:
modes <- nma(pdb) Error: could not find function "nma" ?nma No documentation for ‘nma’ in specified packages and libraries: you could try ‘??nma’
lbio3d() [1] "aa123" "aa2index"
[3] "aa321" "aln2html"
[5] "angle.xyz" "atom2xyz"
[7] "atom.select" "blast.pdb"
[9] "bounds" "bwr.colors"
[11] "chain.pdb" "cmap"
[13] "consensus" "conserv"
[15] "convert.pdb" "core.find"
[17] "dccm" "diag.ind"
[19] "difference.vector" "dist.xyz"
[21] "dm" "dm.xyz"
[23] "dssp" "entropy"
[25] "fit.xyz" "gap.inspect"
[27] "get.pdb" "get.seq"
[29] "ide.filter" "identity"
[31] "is.gap" "lbio3d"
[33] "mktrj.pca" "mono.colors"
[35] "motif.find" "orient.pdb"
[37] "overlap" "pairwise"
[39] "pca.project" "pca.tor"
[41] "pca.xyz" "pca.xyz2z"
[43] "pca.z2xyz" "pdbaln"
[45] "pdb.summary" "plot.bio3d"
[47] "plot.blast" "plot.core"
[49] "plot.dccm" "plot.dmat"
[51] "plot.pca" "plot.pca.loadings" [53] "plot.pca.score" "plot.pca.scree"
[55] "print.core" "print.pdb"
[57] "print.rle2" "read.all"
[59] "read.crd" "read.dcd"
[61] "read.fasta" "read.fasta.pdb"
[63] "read.ncdf" "read.pdb"
[65] "read.pdcBD" "read.pqr"
[67] "rle2" "rmsd"
[69] "rmsd.filter" "rmsf"
[71] "rmsip" "rot.lsq"
[73] "seq2aln" "seqaln"
[75] "seqaln.pair" "seqbind"
[77] "seq.pdb" "split.pdb"
[79] "store.atom" "stride"
[81] "torsion.pdb" "torsion.xyz"
[83] "trim.pdb" "unbound"
[85] "vec2resno" "wiki.tbl"
[87] "wrap.tor" "write.crd"
[89] "write.fasta" "write.ncdf"
[91] "write.pdb" "write.pqr"
Comments (5)
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reporter SessionInformation:
sessionInfo() R version 3.3.1 (2016-06-21) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.04.4 LTS
locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=Cattached base packages: [1] stats graphics grDevices utils datasets [6] methods base
other attached packages: [1] igraph_1.0.1 bio3d_1.1-5
[3] manipulate_0.98.1062loaded via a namespace (and not attached): [1] magrittr_1.5 tools_3.3.1
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You have installed bio3d_1.1-5, which is very old... Please update the package to the latest version (2.3-1),
install.packages('bio3d')
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reporter Thank you.
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- changed status to resolved
not a bug!
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Can you tell us what version of bio3d are you using? You can check it by typing
sessionInfo()
within R.