Can't load long dcd trajectory

[Former user]

Hello

My name is Lilian and I'm using your bio3d package for structure network construction starting from MD trajectories.

I have 52246 frames of MD trajectory which contains a system of 200 residues. I'm tried many ways load it, but always return the same error "dcdfile <- system.file("/home/lili/Replicas_apo/cruz_simul_apo_repli/total_1us.dcd", package = "bio3d")

read.dcd(dcdfile) Error in read.dcd(dcdfile) : No input DCD file found with name: "

There is somebody who can help me with that issue???

[Xinqiu Yao]

Just provide the path to the DCD file in normal "linux" format (Don't use system.file(), which is unrelated here). read.dcd("/home/lili/Replicas_apo/cruz_simul_apo_repli/total_1us.dcd")

[lilianha]

Thanks a lot!!!

It works perfectly. I don't know that system.file was made only for Windows interfaces, therefore I was doing things following the Tutorial .

Best regards