Usage of subopt.path.r for analysis of WISP results

[Former user]

Hello

I have found recently the subopt.path.r script for calculation of node degeneracy in WISP result. However, I don't understand the meaning of all needed arguments (i.e. inp, state, col, etc) and neither how do I pass them to run Rscript.

Could you explain a little more about it??

Many thanks

[Xinqiu Yao]

Hi,

That is a very OLD script and not recommended to use anymore. We have a formal bio3d function called cnapath(), which can calculate "sub-optimal" paths similar as WISP does. See help(cnapath) for more details.