clean.pdb for cleaning RNA pdb

[sai_bhavani]

r = clean.pdb(p, consecutive = TRUE, force.renumber = FALSE, fix.chain = TRUE, fix.aa = TRUE, rm.wat = FALSE, rm.lig = TRUE, rm.h = FALSE, verbose = FALSE) Error in .check.residue.ambiguity(npdb) : .check.residue.ambiguity(): Found ambiguous residue labeling Error in vec2resno(new.nums, res) : Length miss-match of 'vec' and concetive 'resno'

for some pdb files i am getting this error., am not much of a expertise in R and unable to understand this can u please help me with this!, attaching PDB file

[sai_bhavani]

r = clean.pdb(p, consecutive = TRUE, force.renumber = FALSE, fix.chain = TRUE, fix.aa = TRUE, rm.wat = FALSE, rm.lig = TRUE, rm.h = FALSE, verbose = FALSE) Error in names(npdb$seqres) <- chs : 'names' attribute [469] must be the same length as the vector [468]

i also get this for some other pdb files (1j09.pdb)

[Xinqiu Yao]

Sorry for the delayed reply. I will check and update all relevant functions for better treatment with nucleic acids.

[sai_bhavani]

i have found my mistake.. the fault is with my input files..

though thank you for the response