How to specify whole protein structure in trajectory analysis?
Issue #538
resolved
Hi All, The bio3d tutorial for trajectory analysis has explained the method to superimpose Ca atoms only by this command [ca.inds <- atom.select(pdb, elety="CA")], but I want to select the whole protein structure means including the side chains as well. Can you please help me how to do this?
Thanks in advance!
Amir
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You can select protein by
atom.select(pdb, 'protein')
or non-hydrogen atomsatom.select(pdb, 'noh')
. Checkhelp(atom.select)
for more detail.