Muscle seqaln( ) in linux vs Windows?

[Former user]

I used seqaln() in Windows. I had no problem. But when I used it with the same proteins in linux, seqaln() returns different and wrong results. How is this possible?

I have a list of proteins. In a for loop i execute read.fasta() for each protein and seqaln() with a pdb fasta sequence corresponding to each protein. I had no issue in Windows. But, in linux seqaln() is done with the previous protein fasta not the current one.

[Barry Grant]

This should not happen but it is impossible for us to investigate and solve your issue as you don't provide enough information for us to reproduce.

Note in particular the last point from the posting guide displayed when you clicked on "create issue".

Please provide:

• Detailed steps resulting in error or unexpected result.
• Expected results and actual results.
• Output of sessionInfo() - this will tell us your OS and bio3d version.
• A reproducible example with pasted code and associated data files (attached or linked) to reproduce the problem.

[Xinqiu Yao]

Copied additional info about user's question from the redundant Issue #553 and closed Issue #553.

Also changed 'kind' to non-bug, until the user has provided clearer and more detailed information about his question (as Instructed by Barry).

[Barry Grant]

no info provided