NMA on self-curated pdb files
Issue #600
resolved
Hi,
I would like to run a normal mode analysis on a selection of PDB files that are saved to my working directory. Is it possible to load a directory of PDB files and run the NMA? Any suggestions would be greatly appreciated!
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Hi,
Yes, of course. Please go through bio3d tutorials, especially Beginning structure analysis and Ensemble normal mode analysis I (http://thegrantlab.org/bio3d/tutorials). In the tutorials, we download pdbs from database. In you case, you just need a list of file names (e.g., using
list.files()
. Seehelp(list.files)
for more information) and the proceed withpdbaln()
etc.