Mike

[Former user]

When using the WebApp, I want to put in a list of pdb names which includes some chains from ribosome structures. However, the structure files are bundled and when downloaded from the PDB there is a mapping file that is used to relate the chain ID to the specific bundle file and chain ID in that file. It seems I cannot input, eg, the PDB chain name "6GQ1_AZ" in the text box for the WebAPP. Is there any workaround to be able to use the WebApp in such cases? If not, can I do the analysis by downloading the Bio3D software? Many thanks!

[Barry Grant]

This will be tricky to do the way you want in the WebApp. You will likely need to use bio3d proper and analyze a directory/folder of the structures you actually want. There are tutorials online that will help you get started here such as: http://thegrantlab.org/bio3d/tutorials/principal-component-analysis