How to extract multiple chains together using pdbsplit?
Issue #631
resolved
Hi I have a PDB files that contain 3 or more chains, say A, B C. I would like to get the AB chains together and do some calculation. So far I pdbsplit can only extract one specific chain, correct?
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If there is only one PDB, the best way is to use
atomselect()
. For example,atomselect(pdb, chain=c('A', 'B'), value=TRUE)
.By default,
pdbsplit()
splits and save all chains in separate files under split_chain/. You can specify what chains to save by the argument ids. See the related documentation for detail.Hope it helps.