Error with read.pdb

[Former user]

I'm trying to read a PDB file (I tried both local file and online) using the read.pdb function. But I keep receiving the following error:

Error: 'aa.table' is not an exported object from 'namespace:bio3d'.

I'm using an Ubuntu machine with R version 3.5.1.

[Xinqiu Yao]

Can you tell what version of bio3d are you using?

[Former user]

Sorry, I thought you could all see the box with the information. Anyway, v2.3-4.

[Xinqiu Yao]

I've tested without errors.

Please make sure you don't have any setup in ~/.Renviron or ~/.Rprofile that may load an older version of bio3d. Also, check the output of sessionInfo() to see if everything is what you want.

[Former user]

I checked but it seems like I don't even have those two files. I only have attached some base packages like stats and base. I installed Bio3D for the first time today.

[Xinqiu Yao]

Can you try it again with a different machine? I cannot reproduced the error using the same version of R and bio3d (but a different Linux i.e., CentOS). Let me know if the error constantly shows up in your test.

[Former user]

I was suggested to install everything without using Conda, and now it seems to be working properly.

[Xinqiu Yao]

Environment configuration issue. Not a bug