Error with read.pdb
I'm trying to read a PDB file (I tried both local file and online) using the read.pdb function. But I keep receiving the following error:
Error: 'aa.table' is not an exported object from 'namespace:bio3d'.
I'm using an Ubuntu machine with R version 3.5.1.
Comments (7)
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Account Deleted reporter Sorry, I thought you could all see the box with the information. Anyway, v2.3-4.
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I've tested without errors.
Please make sure you don't have any setup in ~/.Renviron or ~/.Rprofile that may load an older version of bio3d. Also, check the output of
sessionInfo()
to see if everything is what you want. -
Account Deleted reporter I checked but it seems like I don't even have those two files. I only have attached some base packages like stats and base. I installed Bio3D for the first time today.
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Can you try it again with a different machine? I cannot reproduced the error using the same version of R and bio3d (but a different Linux i.e., CentOS). Let me know if the error constantly shows up in your test.
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Account Deleted reporter I was suggested to install everything without using Conda, and now it seems to be working properly.
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- changed status to resolved
Environment configuration issue. Not a bug
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Can you tell what version of bio3d are you using?