old version of aaindex? missing some features

[Lucas Carey]

Hi,

When I load AAIndex ( data(aa.index) , https://www.genome.jp/aaindex/ ) some features, that are in the current aaindex1, such as KARS160101, are missing. I’m wondering if the version of the aaindex1 datataset is old?

Also, can you share the code you use to convert aaindex1 into a data.frame?

thanks

-Lucas

[Xinqiu Yao]

Hi Lucas,

‌

Yes, the index is not the latest. Thanks for catching it.

‌

May Lars help with the script request please? (although it shouldn’t be too difficult to parse the file)

[Xinqiu Yao]

Update AAIndex.