- changed status to resolved
hmmscan error
Issue #720
resolved
I'm having issues running hmmer with hmmscan for my input sequence of a fusion transcript (bio3d version 2.4.1) : pfamGeneDomainFusion<-bio3d::hmmer(aln,type="hmmscan") which errors out with: StartTag: invalid element name Error: 1: StartTag: invalid element name
I ran hmmscan using the same sequence online and the results are here: https://www.ebi.ac.uk/Tools/hmmer/results/1D2D7C10-51A5-11EA-B53B-FF35E976C163/score
Please let me know how I could fix this issue. I also tried to download the devel package but that didnt fix the error either.
Thanks, Krutika
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Assume it has been resolved by v2.4-2. Will reopen if the issue persists.