Calculate Mainchain and Sidechain Torsion/Dihedral Angles

[Former user]

Hello everyone,

I'm currently writing on my bachelorthesis and using bio3d for the first time, so this might seem like a redundant question. So far it was amazing to work with bio3d, since everything is perfectly explained on the website. I am calculating the torsion angles with the command "torsion.pdb(pdb)". But the output only shows the sidechain angles of the first six amino acids. Since I'm working with small peptides with a size up to 10 amino acids it is incomplete. How is it possible to calculate the side chain angles of the remaining 4 or so amino acids? Thanks a lot!

Kind regards Athi

[Xinqiu Yao]

Can you provide an example pdb and so we can reproduce your problems and check? It works fine for many other pdb files.

[Xinqiu Yao]

Not a bug

[Xinqiu Yao]

Closed because no reply