Reading in Fasta Sequence for PCA and NMA

[Former user]

Hi everyone, did anybody successfully read in alignment files and use the sequence alignment for PCA and NMA? I am currently having trouble reading my alignment file in.

[Daniel Lim]

# Read sequence alignment

file <- ("path to file")

aln <- read.fasta(file)

# Read aligned PDBs

pdbs <- read.fasta.pdb(aln)

[Xinqiu Yao]

Hi,

‌

Check aln$id and make sure the output points to some really existing PDB files.

[Xinqiu Yao]

Not a bug

[Xinqiu Yao]

No reply