fail to run "read.pdb"

[Yyj]

Hi，could you tell me how to solve this problem, thank you very much.

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[Xinqiu Yao]

Hi,

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I just tried and had no problem. Please update your bio3d package through install.packages(“bio3d”).

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> pdb <- read.pdb("5x8h")
  Note: Accessing on-line PDB file

> pdb

 Call:  read.pdb(file = "5x8h")

   Total Models#: 1
     Total Atoms#: 7463,  XYZs#: 22389  Chains#: 4  (values: A B C D)

     Protein Atoms#: 7332  (residues/Calpha atoms#: 992)
     Nucleic acid Atoms#: 0  (residues/phosphate atoms#: 0)

     Non-protein/nucleic Atoms#: 131  (residues: 131)
     Non-protein/nucleic resid values: [ HOH (131) ]

   Protein sequence:
      GILDNKVALVTGAGSGIGLAVAHSYAKEGAKVIVSDINEDHGNKAVEDIKAQGGEASFVK
      ADTSNPEEVEALVKRTVEIYGRLDIACNNAGIGGEQALAGDYGLDSWRKVLSINLDGVFY
      GCKYELEQMEKNGGGVIVNMASIHGIVAAPLSSAYTSAKHAVVGLTKNIGAEYGQKNIRC
      NAVGPAYIETPLLESLTKEMKEALISKHPMGRLGKPEEVAELVLF...<cut>...YTAV

+ attr: atom, xyz, seqres, helix, sheet,
        calpha, remark, call

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[Xinqiu Yao]

Not a bug

[Xinqiu Yao]

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