anno <- pdb.annotate(ids) in the nma tutorial doesn't work

[Former user]

Hello,

I'm following the nma tutorial for my own protein and I've found that even if I follow the instructions exactly, when I get to the annotate collected pdb structures I get the following error when I execute the anno <- pdb.annotate(ids) command:

Error: Not Found In addition: Warning message: In pdb.annotate(ids) : ids should be standard 4 character PDB-IDs: trying first 4 characters...

Is there a way to fix this? Kind regards, Sam

[Xinqiu Yao]

Hi,

‌

This error has been reported in another issue. We are working on it. The cause is that PDB has recently updated their API, which breaks all old ways to access their data. We need to reprogram the entire function to be compatible with the new interface.

[Xinqiu Yao]

Fixed by the recent commits.