Could you tell me how to change community spheres radius in community network analysis?

[Former user]

For the Figure 8 in the section of Protein Structure Networks with Bio3D ( http://thegrantlab.org/bio3d/articles/online/cna_vignette/cna_vignette.spin.html) How to remove community spheres by deleting graphical objects in VMD? could you give me more instruction? Besides, could you tell me how to change community spheres radius ? (in my protein, the ommunity spheres with large radius cover a few small community.)

[Xinqiu Yao]

To remove spheres in VMD, in the VMD terminal, type draw delete all

To change community size, try plot(net, pdb=pdb, vertex.size=V(net$community.network)$size*0.5), which will show half size for all communities. You may change the last number ‘0.5’ to other scales.

[Xinqiu Yao]

Not a bug