RMSD plot per time

[zeinab masoomi]

Hi. I made an RMSD plot per frame but I need a plot per time, can I plot it with bio3d?

[Xinqiu Yao]

My understanding is that you want to convert frame No.s to time, right? It should be easy to convert by providing a proper x variable. For example, x <- seq(0, T, T/N), where T is the total simulation time and N is the total number of frames. Then, plot(x=x, y=rmsd, ...).