problem with RMSF plotting

[zeinab masoomi]

Hi,

recently, I noticed that my trajectory file has an issue in amino acid order, so I calculated the RMSF numbers for each residue, but I need to displace them. Is there any function for this? ( manipulating the RMSF numbers order then use them as input for plotting)

I’ll appreciate any suggestion. Thank you very much

[Xinqiu Yao]

Hi,

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I am not very clear about what exactly you want to do here. If just to reorder the RMSF values, it should be very easy because each RMSF result is simply a vector and in R you can reorder the elements of a vector any way you want.