In pdb2sse(pdb) : No helix and sheet defined in input 'sse' PDB object: try using dssp()

[afra 1]

When trying to plot Bfactor, next message pops up "In pdb2sse(pdb) : No helix and sheet defined in input 'sse' PDB object: try using dssp()” I have tried to use dssp(), but is not working either. What can I do, the pdb file I am using was generated from ClusPro, it could be an error on the pdb file?

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Thank you.

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[Xinqiu Yao]

Most likely, your generated pdb does not contain any ‘SSE’ information. Normally, dssp() should work. What is the output after calling dssp()? Any error messages?