Can only use one core in dccm() or cna().

Issue #974 new
tianyu chen (tyuu) created an issue

When I run Network Analysis, It takes a long time.Dispite I set ““ncore =6 “”, I found it that the CPU usage is only 100%.I install parallel package, I don’t know how to solve the problem.

Comments (3)

  1. Xinqiu Yao

    cna() does not support ncore>1. It is slow most likely because the network has too many edges. Did you use a contact/distance map to filter the correlation matrix? Have you tried a larger cij cutoff to see if it is faster? You can also use pymol(cij)to visually check the edges.

    Let me know if you have further questions.

  2. tianyu chen (tyuu) reporter

    Thank you, after increased the cij cutoff of cna, I got results fast.

    I also have to adjust the cutoff value to get the right result.

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