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Issues (101–125 of 307)

Title T P Status Votes Assignee Version Created Updated Actions
#684: PDB SPLIT ISSUE
Q&A
task major closed
#694: how to use filter.dccm on multiple MD simulations
Q&A
task minor resolved
#582: How to add MUSCLE to my search path in Win7 and run demo("pca") successfully?
Q&A
bug major resolved
#705: Structural Alignment and Trimming of Aligned Protein
Q&A
proposal minor new
#702: unequal vector lengths error in pymol.dccm
Q&A
task major resolved
#701: distance filters
Q&A
proposal minor new
#699: cna error
Q&A
task major resolved
#696: DSSP plotting vs residues number
Q&A
proposal major new
#691: Clustering trajectories and PCA data
Q&A
task critical new
#543: Suboptimal path calculation question
Q&A
bug minor resolved
#681: correlation analysis
Q&A
task minor closed
#689: plot.dccm and network analysis
Q&A
task trivial resolved
#690: PCA
Q&A
proposal trivial new
#643: Error in dssp.pdb(pdb) - unhelpful error message
Q&A
proposal minor closed
#649: Some questions on RMSF analysis
Q&A
proposal minor resolved
#652: Error in cmdscale(dist(cent), k = k) : NA values not allowed in 'd' for a system with a non-bonded cofactor
Q&A
task minor resolved
#653: Individual PCA plots and colour scheme
Q&A
task major resolved
#654: Tutorial - pdb to RGL conversion for Shiny app
Q&A
proposal minor resolved
#656: PCA on particular residues
Q&A
task trivial resolved
#659: Plot values of principal components (instead proportion of variance)
Q&A
task minor resolved
#660: Unit of the eigenvalues of the PCA
Q&A
task minor resolved
#663: export graph file to Cytoscape
Q&A
enhancement major resolved
#665: How to generate 2D and 3D free energy landscape plots
Q&A
proposal critical closed
#667: Phi/Psi error?
Q&A
task major closed
#672: How to read large dcd files; change X-axis to Time (ns); plot secondary structure throughout simulation; plot free energy landscape?
Q&A
task critical new
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