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Issues (1–25 of 43)

Title T P Status Votes Assignee Version Created Updated Actions
#840: How to extract data from PCA?
Q&A
task major resolved
#823: How to extract subset of protein structure (PDB format) file based on a subsequence of protein
Q&A
proposal minor resolved
#649: Some questions on RMSF analysis
Q&A
proposal minor resolved
#674: Increasing the percent identity of similar structures/sequences retrieved using blast.pdb() and hmmer()
Q&A
enhancement minor resolved
#675: Can't generate pdb aligned plot
Q&A
task minor resolved
#682: Visualization of multiple simulations on same PCA
Q&A
enhancement minor resolved
#608: Writing a PDB with a B-factor column from PCA for atom wise loading, displacement
Q&A
task minor resolved
#596: plot(modes, pdbs=pdbs, col=col). Error in e[, "start"] : incorrect number of dimensions
Q&A
bug major resolved
#559: Ensemble PDB instead of .dcd for MD analysis ?
Q&A
task minor resolved
#538: How to specify whole protein structure in trajectory analysis?
Q&A
task minor resolved
#522: confidence values
Q&A
task trivial resolved
#447: Modularity
Q&A
task trivial resolved
#425: Problem Still Persists : Reading PDB file from a Local Disk.
Q&A
task trivial resolved
#426: Porcupine plot using Bio3D
Q&A
task minor resolved
#423: Reading PDB file from local disk
Q&A
task critical resolved
#424: Reading PDB file from local disk
Q&A
task trivial resolved
#407: odd behavior
Q&A
bug major resolved
Bio3D Project
#384: pymol visualization mktrj.enma
Q&A
task trivial resolved
#389: Use pdbfit() to an specific range of residues.
Q&A
task minor resolved
#385: Eigenvalue, Frequency, Fluctuation Plot
Q&A
task trivial resolved
#370: Negative similarity conservation scores
Q&A
task trivial resolved
#346: save pdbs after superposition via pdbfit and fit.xyz
Q&A
task minor resolved
#326: Give up trying to find out how to extract average structure,,
Q&A
task minor resolved
#321: Distance Matrix Units
Q&A
task trivial resolved
Bio3D Project
#323: clustering analysis on molecular dynamics data:
Q&A
task trivial resolved
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