Grantlab / bio3d / issues

Title	T	P	Status	Votes	Assignee	Version	Created	Updated
#401: pca analysis for specific atoms Q&A	task	major	resolved		Bio3D Project		2016-10-13	2016-11-10
#403: How to extrat data from PCA and increase font size Q&A	proposal	major	resolved		Xinqiu Yao	v2.3 [devel]	2016-10-19	2016-11-10
#404: algorithm for suboptimal path calculations	bug	major	resolved		Bio3D Project		2016-10-22	2016-11-10
#400: read.cif issue	bug	major	resolved	1		v2.3 [devel]	2016-10-03	2016-10-04
#186: Integrate view() family functions for interactive 3D structure visualization ToDo	enhancement	major	new		Shashank Jariwala	v2.4/3.0 [future]	2015-02-18	2016-09-22
#327: more than 100,000 atoms notation ToDo	bug	major	resolved		Lars Skjærven	v2.3 [devel]	2016-02-23	2016-09-21
#375: PCA eigenvectors Q&A	task	major	resolved		Bio3D Project	v2.1	2016-07-08	2016-09-21
#378: Calculating the optimal number for k clustering Q&A	task	major	resolved		Bio3D Project		2016-07-14	2016-09-21
#200: aln2plot(): New function for alignment plotting ToDo	proposal	major	new	1		v2.4/3.0 [future]	2015-03-11	2016-09-21
#287: All atom elastic network models ToDo	proposal	major	resolved	3		v2.3 [devel]	2015-09-21	2016-09-12
#393: Regarding Cij matrix calculatd by LMI approach	bug	major	resolved		Bio3D Project		2016-09-03	2016-09-08
#391: Dynamic cross-correlation map (DCCM) Q&A	task	major	resolved			v2.1	2016-08-29	2016-08-30
#380: Cannot read pdb file from local directory Q&A	bug	major	resolved			v2.3 [devel]	2016-07-22	2016-07-29
#373: atom.select() residues that are inserts	enhancement	major	resolved			v2.2	2016-06-17	2016-06-23
#340: Segfault error during PCA	task	major	closed			v2.2	2016-03-22	2016-06-07
#369: How to decide on scut value in cmap function? Q&A	task	major	resolved		Bio3D Project	v2.1	2016-06-03	2016-06-07
#363: issue regarding cmap function	bug	major	resolved		Bio3D Project		2016-05-26	2016-06-03
#354: error in viewing community network in vmd	bug	major	resolved		Bio3D Project		2016-04-19	2016-04-25
#355: Issue with fit.xyz	bug	major	resolved		Bio3D Project		2016-04-22	2016-04-25
#335: Calculating Torsional Angles	task	major	resolved				2016-03-17	2016-04-20
#351: disrepancy between dccm values Q&A	bug	major	resolved		Barry Grant	v2.1	2016-04-12	2016-04-18
#352: RMSD of two different trajectories in one graph Q&A	task	major	resolved				2016-04-17	2016-04-18
#344: how to plot and extract data from cij and net calculations in a multiple chain protein system	bug	major	resolved		Bio3D Project		2016-04-02	2016-04-06
#345: PCA-app, bug related to incresing number of PDBs after visiting ALIGN tab ToDo	bug	major	resolved		Shashank Jariwala	v2.3 [devel]	2016-04-03	2016-04-04
#330: Searching through protiens (PDB files) with R Q&A	task	major	resolved				2016-03-02	2016-04-03

#401: pca analysis for specific atoms

Q&A

task

major

resolved

Bio3D Project

2016-10-13

2016-11-10

#403: How to extrat data from PCA and increase font size

Q&A

proposal

major

resolved

Xinqiu Yao

v2.3 [devel]

2016-10-19

2016-11-10

#404: algorithm for suboptimal path calculations

bug

major

resolved

Bio3D Project

2016-10-22

2016-11-10

#400: read.cif issue

bug

major

resolved

1

v2.3 [devel]

2016-10-03

2016-10-04

#186: Integrate view() family functions for interactive 3D structure visualization

ToDo

enhancement

major

new

Shashank Jariwala

v2.4/3.0 [future]

2015-02-18

2016-09-22

#327: more than 100,000 atoms notation

ToDo

bug

major

resolved

Lars Skjærven

v2.3 [devel]

2016-02-23

2016-09-21

#375: PCA eigenvectors

Q&A

task

major

resolved

Bio3D Project

v2.1

2016-07-08

2016-09-21

#378: Calculating the optimal number for k clustering

Q&A

task

major

resolved

Bio3D Project

2016-07-14

2016-09-21

#200: aln2plot(): New function for alignment plotting

ToDo

proposal

major

new

1

v2.4/3.0 [future]

2015-03-11

2016-09-21

#287: All atom elastic network models

ToDo

proposal

major

resolved

3

v2.3 [devel]

2015-09-21

2016-09-12

#393: Regarding Cij matrix calculatd by LMI approach

bug

major

resolved

Bio3D Project

2016-09-03

2016-09-08

#391: Dynamic cross-correlation map (DCCM)

Q&A

task

major

resolved

v2.1

2016-08-29

2016-08-30

#380: Cannot read pdb file from local directory

Q&A

bug

major

resolved

v2.3 [devel]

2016-07-22

2016-07-29

#373: atom.select() residues that are inserts

enhancement

major

resolved

v2.2

2016-06-17

2016-06-23

#340: Segfault error during PCA

task

major

closed

v2.2

2016-03-22

2016-06-07

#369: How to decide on scut value in cmap function?

Q&A

task

major

resolved

Bio3D Project

v2.1

2016-06-03

2016-06-07

#363: issue regarding cmap function

bug

major

resolved

Bio3D Project

2016-05-26

2016-06-03

#354: error in viewing community network in vmd

bug

major

resolved

Bio3D Project

2016-04-19

2016-04-25

#355: Issue with fit.xyz

bug

major

resolved

Bio3D Project

2016-04-22

2016-04-25

#335: Calculating Torsional Angles

task

major

resolved

2016-03-17

2016-04-20

#351: disrepancy between dccm values

Q&A

bug

major

resolved

Barry Grant

v2.1

2016-04-12

2016-04-18

#352: RMSD of two different trajectories in one graph

Q&A

task

major

resolved

2016-04-17

2016-04-18

#344: how to plot and extract data from cij and net calculations in a multiple chain protein system

bug

major

resolved

Bio3D Project

2016-04-02

2016-04-06

#345: PCA-app, bug related to incresing number of PDBs after visiting ALIGN tab

ToDo

bug

major

resolved

Shashank Jariwala

v2.3 [devel]

2016-04-03

2016-04-04

#330: Searching through protiens (PDB files) with R

Q&A

task

major

resolved

2016-03-02

2016-04-03

Issues

Issues (276–300 of 397)