Grantlab / bio3d / issues

Title	T	P	Status	Votes	Assignee	Version	Created	Updated
#205: seqaln does not properly detect clustalo using exefile	bug	minor	resolved			v2.2	2015-03-18	2015-03-18
#203: Installing Bio3d on Ubuntu 14.04 Q&A	task	minor	resolved			v2.2	2015-03-16	2015-03-16
#188: selecting representative side chain atoms using atom.select Q&A	task	minor	resolved		Barry Grant		2015-02-20	2015-03-06
#193: nma.pdbs() extension to include other ff terms Q&A	proposal	minor	resolved			v2.1	2015-02-25	2015-03-01
#192: pdbsplit() action Q&A	proposal	minor	resolved			v2.1	2015-02-25	2015-03-01
#148: Alignment for remote homologues ToDo	proposal	minor	new				2014-12-10	2015-02-26
#139: A more general function doing similar fluctuation plot as plot.enma()	proposal	minor	resolved				2014-11-25	2015-02-26
#141: Please build vignette for pdb structure manipulation	enhancement	minor	resolved		Bio3D Project		2014-11-26	2015-02-26
#191: using the cmap function Q&A	task	minor	resolved		Barry Grant		2015-02-23	2015-02-25
#185: Test: some feature request ToDo	proposal	minor	closed	1			2015-02-18	2015-02-21
#164: Understanding the output from view.cnapath()	task	minor	resolved				2015-01-07	2015-02-18
#43: Create a data file for residue/value mappings	enhancement	minor	resolved		Lars Skjærven		2013-10-17	2015-02-14
#162: Q&A: Question about bio3d CNA	task	minor	resolved				2015-01-05	2015-02-05
#180: Integrating normal mode analysis and correlation network	bug	minor	resolved		Lars Skjærven		2015-02-04	2015-02-05
#98: multiple calls to setup.ncore()	bug	minor	resolved				2014-07-29	2015-01-28
#171: Suggestions for cat.pdb()	proposal	minor	resolved				2015-01-19	2015-01-28
#169: protein-DNA complex pdbaln() possible?	proposal	minor	resolved				2015-01-17	2015-01-27
#175: Is it possible to do charge and/or hydrophobicity analysis of multiple aligned sequences in Bio3d?	enhancement	minor	resolved		Barry Grant		2015-01-22	2015-01-23
#125: RNA structures with core.find()	proposal	minor	resolved				2014-11-06	2014-12-18
#144: issue with comparing MD PCs and X-ray PCs	task	minor	resolved				2014-12-01	2014-12-17
#156: memory issue with bio3d	bug	minor	resolved				2014-12-14	2014-12-17
#157: interface of bio3d and wisp	enhancement	minor	resolved				2014-12-15	2014-12-17
#154: Questions related to plot.cmap function	enhancement	minor	resolved				2014-12-12	2014-12-16
#151: Only plotting upper triangular half of the cij matrix using plot.dccm possible?	enhancement	minor	resolved				2014-12-12	2014-12-16
#153: NMA of local PDB files	proposal	minor	resolved				2014-12-12	2014-12-14

#205: seqaln does not properly detect clustalo using exefile

bug

minor

resolved

v2.2

2015-03-18

#203: Installing Bio3d on Ubuntu 14.04

Q&A

task

minor

resolved

v2.2

2015-03-16

#188: selecting representative side chain atoms using atom.select

Q&A

task

minor

resolved

Barry Grant

2015-02-20

2015-03-06

#193: nma.pdbs() extension to include other ff terms

Q&A

proposal

minor

resolved

v2.1

2015-02-25

2015-03-01

#192: pdbsplit() action

Q&A

proposal

minor

resolved

v2.1

2015-02-25

2015-03-01

#148: Alignment for remote homologues

ToDo

proposal

minor

new

2014-12-10

2015-02-26

#139: A more general function doing similar fluctuation plot as plot.enma()

proposal

minor

resolved

2014-11-25

2015-02-26

#141: Please build vignette for pdb structure manipulation

enhancement

minor

resolved

Bio3D Project

2014-11-26

2015-02-26

#191: using the cmap function

Q&A

task

minor

resolved

Barry Grant

2015-02-23

2015-02-25

#185: Test: some feature request

ToDo

proposal

minor

closed

1

2015-02-18

2015-02-21

#164: Understanding the output from view.cnapath()

task

minor

resolved

2015-01-07

2015-02-18

#43: Create a data file for residue/value mappings

enhancement

minor

resolved

Lars Skjærven

2013-10-17

2015-02-14

#162: Q&A: Question about bio3d CNA

task

minor

resolved

2015-01-05

2015-02-05

#180: Integrating normal mode analysis and correlation network

bug

minor

resolved

Lars Skjærven

2015-02-04

2015-02-05

#98: multiple calls to setup.ncore()

bug

minor

resolved

2014-07-29

2015-01-28

#171: Suggestions for cat.pdb()

proposal

minor

resolved

2015-01-19

2015-01-28

#169: protein-DNA complex pdbaln() possible?

proposal

minor

resolved

2015-01-17

2015-01-27

#175: Is it possible to do charge and/or hydrophobicity analysis of multiple aligned sequences in Bio3d?

enhancement

minor

resolved

Barry Grant

2015-01-22

2015-01-23

#125: RNA structures with core.find()

proposal

minor

resolved

2014-11-06

2014-12-18

#144: issue with comparing MD PCs and X-ray PCs

task

minor

resolved

2014-12-01

2014-12-17

#156: memory issue with bio3d

bug

minor

resolved

2014-12-14

2014-12-17

#157: interface of bio3d and wisp

enhancement

minor

resolved

2014-12-15

2014-12-17

#154: Questions related to plot.cmap function

enhancement

minor

resolved

2014-12-12

2014-12-16

#151: Only plotting upper triangular half of the cij matrix using plot.dccm possible?

enhancement

minor

resolved

2014-12-12

2014-12-16

#153: NMA of local PDB files

proposal

minor

resolved

2014-12-12

2014-12-14

Issues

Issues (301–325 of 389)