1. Bio3D Project Avatar Bio3D Project
  2. Bio3D
  3. bio3d

Issues

Filter by:

Advanced search

Issues (351–375 of 943)

Title T P Status Votes Assignee Version Created Updated Actions
#616: What is the meaning of "Normal mode analysis"?
proposal major resolved
#608: Writing a PDB with a B-factor column from PCA for atom wise loading, displacement
Q&A
task minor resolved
#600: NMA on self-curated pdb files
Q&A
task minor resolved
#609: Can't enter PDB codes
ToDo
bug minor new
#603: Is it possible to save ".dat" before plotting?
Q&A
enhancement minor resolved
#604: atom_selection with segid?
Q&A
proposal minor resolved
#610: How to store only first mode result in aanma.pdbs()/nma.pdbs()?
Q&A
task minor resolved
#599: Is the 1st plot in plot(pc$U) the same as plot(pc$au[,1])?
task minor resolved
#598: overlap analysis only with positive or negative part of the movement
task major resolved
#585: How to make the differences of residue cross correlation more obvious?
task major resolved 1
#606: How to produce trajectories that only based on certain frames along a given principal component?
task major new
#583: Can PCA be used to analyse two ensembles of protein structures?
Q&A
task major new
#605: Calculating screw transformation between two protein subunits
task major new
#589: How to load multiple dcd files for PCA?
task major new
#594: issue_with_rmsip
task major resolved
#586: warning about read.dcd() and some problems about protein structure network
bug major resolved
#581: Typo in the tutorial webpage
ToDo
task minor new
#592: Deformation Energies from MD Trajectories
ToDo
proposal minor new
#596: plot(modes, pdbs=pdbs, col=col). Error in e[, "start"] : incorrect number of dimensions
Q&A
bug major resolved
#595: Can I plot a normal matrix like plot(cij)?
task major resolved
#593: What if pdb and dcd do not match?
bug major resolved
#591: increase number of chainIDs beyond Z for vmd.cna pdb output
enhancement minor new
#590: How to visualise the secondary structure of pc1.pdb?
task major new
#587: Generating protein motion movie from aanma or nma?
Q&A
task minor new
#358: How to get per residue rmsf for each frame in the trajectory?
Q&A
task minor resolved
  2. 1
  3. 2
  4. …
  5. 13
  6. 14
  7. 15
  8. 16
  9. 17
  10. 18
  11. …
  12. 37
  13. 38