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Issues (476–500 of 933)

Title T P Status Votes Assignee Version Created Updated Actions
#473: Water drop
Q&A
task minor new
#471: DCCM PLOT from GROMACS MD Trajectory
ToDo
bug major resolved
#470: Error in downloading PDBs
bug major resolved
#467: Issue in all-atom Normal mode analysis (ENM)
task trivial resolved
#466: Incorporating Ligand into calculations and other errors
enhancement minor new
#443: Cannot get pdbaln and muscle to work
proposal minor resolved
#442: Clustering ligand
task minor resolved
#444: Ionic pairs within protein
ToDo
enhancement minor resolved
#449: "Expectation Failed" error when attempting a hmmsearch with hmmer command
bug major resolved
#447: Modularity
Q&A
task trivial resolved
#451: Side chain selection only for b-factor analysis
ToDo
task major resolved
#456: Usage of subopt.path.r for analysis of WISP results
Q&A
task trivial resolved
#457: Statistical Coupling Analysis
ToDo
proposal minor new
#459: Question regarding CNA of trajectories
Q&A
task minor resolved
#458: PCA calulation for long simulations
task trivial resolved
#460: RMSF figure similar to Biophysical Journal Vol 107 Nov. 2014 pp 2204-2213
task trivial resolved
#463: PCA: How to project the holo trajectory onto the first two eigenvectors of the apo one
task trivial resolved
#462: package ‘muscle’ is not available (for R version 3.4.0)
enhancement minor resolved
#461: couldn't find the expected colour scale in interpolated structure made by mktrj.pca() funtion
task trivial resolved
#263: Unable to load pymol
ToDo
proposal minor new
#453: detecting peptide plane flips
enhancement minor new
#446: Want to make distance vs. time and torsion vs. time graphs from MD trajectory
task major resolved
#450: pdb object
ToDo
bug minor resolved
#445: cmap appears for force.renumber atoms
enhancement minor new
#441: Starting pdb file for trajectory analysis (gromacs MD)
Q&A
task major resolved
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