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Issues (501–525 of 944)

Title T P Status Votes Assignee Version Created Updated Actions
#458: PCA calulation for long simulations
task trivial resolved
#460: RMSF figure similar to Biophysical Journal Vol 107 Nov. 2014 pp 2204-2213
task trivial resolved
#463: PCA: How to project the holo trajectory onto the first two eigenvectors of the apo one
task trivial resolved
#462: package ‘muscle’ is not available (for R version 3.4.0)
enhancement minor resolved
#461: couldn't find the expected colour scale in interpolated structure made by mktrj.pca() funtion
task trivial resolved
#263: Unable to load pymol
ToDo
proposal minor new
#453: detecting peptide plane flips
enhancement minor new
#446: Want to make distance vs. time and torsion vs. time graphs from MD trajectory
task major resolved
#450: pdb object
ToDo
bug minor resolved
#445: cmap appears for force.renumber atoms
enhancement minor new
#441: Starting pdb file for trajectory analysis (gromacs MD)
Q&A
task major resolved
Bio3D Project
#440: Issue in tutorial (Protein Structure Networks with Bio3D)
task minor resolved
#439: Extracting data from bio3d plots
ToDo
task major resolved
Bio3D Project
#431: Issue in Alignment and how to use Amber trajectory?
ToDo
task major resolved
Bio3D Project
#427: How to deal with the missing residuals for torsion calculation?
enhancement major resolved
#430: Issue in Muscle Alignment using Windows 8?
Q&A
task trivial resolved
Bio3D Project
#436: Torsional PCA error
task minor resolved
#438: Q: How to calculate RMSF for specific residues
Q&A
task major resolved
#437: read.dcd error for MD trajectory
task minor resolved
#434: Can't load long dcd trajectory
bug major resolved
#429: Missing view.cna module
bug major resolved
#435: GNM model issue
task minor resolved
#433: dccm cross correlation length mismatch
task trivial resolved
#432: NMA difference between NMA and AANMA algorithm
bug major resolved
#428: Convert/Coerce DCCM .cij to basic matrix
enhancement major resolved
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