1. Bio3D Project Avatar Bio3D Project
  2. Bio3D
  3. bio3d

Issues

Filter by:

Advanced search

Issues (76–100 of 274)

Title T P Status Votes Assignee Version Created Updated Actions
#618: bug in choosing the core (print(core, vol=))?
bug major resolved
#623: Frequency of movements during PCA
Q&A
task major resolved
#617: edge thickness and the length of edge
Q&A
task major resolved
#607: what is the weight of the network?
task major resolved 1
#616: What is the meaning of "Normal mode analysis"?
proposal major resolved
#598: overlap analysis only with positive or negative part of the movement
task major resolved
#585: How to make the differences of residue cross correlation more obvious?
task major resolved 1
#594: issue_with_rmsip
task major resolved
#586: warning about read.dcd() and some problems about protein structure network
bug major resolved
#596: plot(modes, pdbs=pdbs, col=col). Error in e[, "start"] : incorrect number of dimensions
Q&A
bug major resolved
#595: Can I plot a normal matrix like plot(cij)?
task major resolved
#593: What if pdb and dcd do not match?
bug major resolved
#584: How to modify the "plot(cij)" for "Residue Cross Correlation"
task major resolved
#578: Gromacs: Can we process the ss.xpm secondary structure file and save it in R?
proposal major resolved
#575: Customise the residues and correlation displayed in pymol.dccm
proposal major resolved
#579: Unable to read dcd file
bug major resolved
#502: PCA for tetramer
task major resolved
#523: Entropy for the entire protein
enhancement major resolved
#532: NMA_with_arbitrary_defined_rigid_domains
enhancement major resolved
Bio3D Project
#536: Homodimer ensemble NMA
task major resolved
#508: PCA by torsion angles of selected residues
task major resolved
#563: PCA with non-standard residue name
bug major resolved
#568: All-atom NMA algorithm and scoring function?
Q&A
task major resolved
#570: Score calculations normal modes (SIP,RMSIP)
Q&A
task major resolved
#572: blast.pdb problem
bug major resolved
  2. 1
  3. 2
  4. 3
  5. 4
  6. 5
  7. 6
  8. 7
  9. 8
  10. 9
  11. 10
  12. 11