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Issues (126–150 of 944)

Title T P Status Votes Assignee Version Created Updated Actions
#866: ClusPro output pdb file gives read.pdb error
Q&A
bug major resolved
#868: calling and location of dssp
Q&A
bug major resolved
#869: Output from pca analysis
bug minor resolved
#871: problem with RMSF plotting
task critical new
#870: thickness of RMSF plot
enhancement major new
#867: Comparison of the degree of collectivity of motions amongst proteins in a dataset
enhancement major new
#863: Calculating Center of Mass of a protein and the corressponding displacement over the entire MD trajectory
Q&A
task major resolved
#832: Memory limitations with all-atom NMA
bug major new
#855: Loading in a list of `xyz` coordinates as a "dummy" PDB file
Q&A
enhancement minor new
#852: GeoStaS and Residue Cross Correlation: Clarifications needed
enhancement major new
#99: Deformation energies after ensemble NMA
enhancement minor resolved
#851: Function for calculating TM-scores
enhancement major new
#726: Option to include key for RMSIP matrix heatmap
Q&A
enhancement minor new
#847: Question about domain analysis with GeoStaS
Q&A
task major new
#842: apo and bound state dccm plot
task minor new
#833: mean RMSF calculation for protein ensembles
Q&A
task major new
#840: How to extract data from PCA?
Q&A
task major resolved
#838: How to extract data from PCA?
Q&A
bug major closed
#839: How to extract data from PCA?
Q&A
bug major closed
#834: issue in installation of "bio3d-geostas” and “bio3d-nma” packages
ToDo
task major resolved
#829: Calculation killed when running conservation calcultions on large fasta files
task major new
#828: Calculation killed when running conservation calcultions on large fasta files
Q&A
bug major new
#827: .format_tbl() in pdb.annotate() cannot handle "source" with no value
ToDo
bug major resolved
#823: How to extract subset of protein structure (PDB format) file based on a subsequence of protein
Q&A
proposal minor resolved
#518: Employing consistent communities in network analsis for direct comparison between systems
Q&A
proposal major resolved 2
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