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Issues (151–175 of 944)

Title T P Status Votes Assignee Version Created Updated Actions
#819: eNMA object: obtaining fluctuations from a subset of modes
Q&A
enhancement major new
#817: PCA/NMA differences
Q&A
task minor new
#793: read.dcd(big = TRUE) Error
bug major new
#768: Calculation of 'significantly' stronger correlation couplings in CNA
Q&A
task major closed
#770: MD trajectories analysis on cross correlation network analysis and PCA clustering memory issues
Q&A
task major closed
#771: atom selection for nucleic acid residues
ToDo
task minor closed
#758: cna with explicit cluster.method
Q&A
bug major closed
#761: Reading in Fasta Sequence for PCA and NMA
task minor closed
#751: Calculate Mainchain and Sidechain Torsion/Dihedral Angles
Q&A
task minor closed
#746: pdbaln fails to read one PDB in a set of PDBs, unhelpful error message
Q&A
bug minor resolved
#717: geostas stalls at core.find
bug major resolved
#719: Not accessing installed DSSP from bio3d
Q&A
bug major closed
#786: pdb.annotate not working?
ToDo
bug major resolved
#787: fail to run "read.pdb"
Q&A
task minor closed
#791: Unable to run stride function
task minor closed
#794: anno <- pdb.annotate(ids) in the nma tutorial doesn't work
bug major resolved
#796: Unable to run cna process
Q&A
bug major closed
#799: PC1 and PC2 gives almost identical trajectories while the vector representation (porcupine plot) gives orthogonal PC maps
task major new
#795: pca.project doesn't work if structures to project are smaller than those used to make the pca
Q&A
task minor closed
#816: Selection of specific modes from Ensemble NMA
Q&A
enhancement major new
#814: Obtain aligned eigenvectors from nma modes
Q&A
enhancement major new
#810: Error in cmdscale(dist(cent), k = k) : NA values not allowed in 'd'
task minor new
#812: NMA Anaysis
Q&A
enhancement major new
#804: 3Dmol.js with {r3dmol}
proposal minor new
#807: vmd.cna
task major new
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